Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.156914	Sf3a1	splicing factor 3a, subunit 1	11		67465
Gene Ontology	mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | RNA binding | RNA processing | spliceosome complex
Human Homolog	SF3A1[splicing factor 3a, subunit 1, 120kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 89 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC CTTATTTGGT (4) 4.9 0.0049 P8 Cb GC CCTGTGATCC (14) 1.6 0.0016 P8 Cb GC CCTTTAATTC (36) 1.6 0.0016 P8 Cb GC TCCTACAGTC 1.6 0.0016 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma CCTTTAATTC (36) 4.6 0.0046 Cb medulloblastoma CCTGTGATCC (14) 2.3 0.0023 Cb medulloblastoma GAGACAGAAG (9) 2.3 0.0023 Cb medulloblastoma GATTCTCTGA (3) 2.3 0.0023 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture CTTTGGTTTC (8) 3.4 0.0034 P8 GC+1d culture CCTGTGATCC (14) 2.3 0.0023 P8 GC+1d culture AAAGAAAATG (6) 1.1 0.0011 P8 GC+1d culture GAGACAGAAG (9) 1.1 0.0011 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture CCTTTAATTC (36) 7 0.007 P8 GC+SHH+1d culture CCTGTGATCC (14) 4.7 0.0047 P8 GC+SHH+1d culture AAAGAAAATG (6) 1.2 0.0012 P8 GC+SHH+1d culture ATACAAAATA (4) 1.2 0.0012 P8 GC+SHH+1d culture CTTTGGTTTC (8) 1.2 0.0012 P8 GC+SHH+1d culture GATTCTCTGA (3) 1.2 0.0012 P8 GC+SHH+1d culture TCCTACAGTC 1.2 0.0012 3T3 fibroblasts CCTTTAATTC (36) 7 0.007 3T3 fibroblasts GATTCTCTGA (3) 3.5 0.0035 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex CCTTTAATTC (36) 13.6 0.0136 P1 cortex CCTGTGATCC (14) 9.1 0.0091 P1 cortex ATACTGACAG 4.5 0.0045 P1 cortex CTTTGGTTTC (8) 4.5 0.0045 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus CCTGTGATCC (14) 3.6 0.0036 Hypothalamus ATACAAAATA (4) 1.8 0.0018 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina CCTGTGATCC (14) 7.5 0.0075 E12.5 retina CCTTTAATTC (36) 3.8 0.0038 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina CCTTTAATTC (36) 7.3 0.0073 E14.5 retina ATACAAAATA (4) 1.8 0.0018 E14.5 retina CTTATTTGGT (4) 1.8 0.0018 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina CCTGTGATCC (14) 7.2 0.0072 E16.5 retina CCTTTAATTC (36) 3.6 0.0036 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina CCTTTAATTC (36) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina CCTTTAATTC (36) 5.9 0.0059 P0.5 retina CCTGTGATCC (14) 3.9 0.0039 P0.5 retina CTTATTTGGT (4) 3.9 0.0039 P0.5 retina CTTTGGTTTC (8) 3.9 0.0039 P0.5 retina TTGGTGCTGC (2) 3.9 0.0039 P0.5 retina TCCTACAGTC 2 0.002 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina CCTGTGATCC (14) 5.3 0.0053 P2.5 retina ATACAAAATA (4) 3.5 0.0035 P2.5 retina CCTTTAATTC (36) 1.8 0.0018 P2.5 retina CTTATTTGGT (4) 1.8 0.0018 P2.5 retina CTTTGGTTTC (8) 1.8 0.0018 P2.5 retina GAGACAGAAG (9) 1.8 0.0018 P2.5 retina TCCTACAGTC 1.8 0.0018 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina CCTGTGATCC (14) 4 0.004 P4.5 retina CCTTTAATTC (36) 4 0.004 P4.5 retina AAAGAAAATG (6) 2 0.002 P4.5 retina CTTATTTGGT (4) 2 0.002 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina CCTTTAATTC (36) 5 0.005 P6.5 retina CCTGTGATCC (14) 1.7 0.0017 P6.5 retina CTTATTTGGT (4) 1.7 0.0017 P6.5 retina GATTCTCTGA (3) 1.7 0.0017 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina CCTGTGATCC (14) 3.7 0.0037 P10.5 crx- retina AAAGAAAATG (6) 1.9 0.0019 P10.5 crx- retina CCTTTAATTC (36) 1.9 0.0019 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina CCTGTGATCC (14) 9.6 0.0096 P10.5 crx+ retina ATACAAAATA (4) 3.8 0.0038 P10.5 crx+ retina TCCTACAGTC 1.9 0.0019 P10.5 crx+ retina TTGGTGCTGC (2) 1.9 0.0019 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal CCTGTGATCC (14) 14.8 0.0148 Adult retinal CCTTTAATTC (36) 1.9 0.0019 Adult retinal TCCTACAGTC 1.9 0.0019 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL CCTTTAATTC (36) 3.8 0.0038 ONL ATACAAAATA (4) 1.9 0.0019 ONL CTTTGGTTTC (8) 1.9 0.0019 ONL GAGACAGAAG (9) 1.9 0.0019