Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.15701	Trim28	tripartite motif protein 28	7		21849
Gene Ontology	chromatin | DNA binding | intracellular | negative regulation of transcription from Pol II promoter | nucleus | protein binding | protein ubiquitination | regulation of transcription, DNA-dependent | transcriptional repressor activity | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	TRIM28[tripartite motif-containing 28]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 58 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGAGCTGA AATGATGCCT GCATTGTCAA GCTCCTCCAA (3) TCTGGCAGTC (3) 32.6 0.0326 Cb medulloblastoma GCTCCTCCAA (3) TCTGGCAGTC (3) 6.9 0.0069 P8 GC+1d culture AATGATGCCT GTATGGGGTG 9.1 0.0091 P8 GC+SHH+1d culture AATGATGCCT CGGCCCACAT GTATGGGGTG TCTGGCAGTC (3) 30.5 0.0305 3T3 fibroblasts AATGATGCCT GTATGGGGTG TCTGGCAGTC (3) 21 0.021 E15 cortex GAGCAGCCTG (2) GTATGGGGTG TCTGGCAGTC (3) 29.6 0.0296 P1 cortex AATGATGCCT GCATTGTCAA TCTGGCAGTC (3) 31.8 0.0318 Hypothalamus CGGCCCACAT 1.8 0.0018 E12.5 retina AATGATGCCT GTATGGGGTG TCTGGCAGTC (3) 37.6 0.0376 E14.5 retina AATGATGCCT CGGCCCACAT TCTGGCAGTC (3) 23.6 0.0236 E16.5 retina AAGGAGCTGA AATGATGCCT TCTGGCAGTC (3) 21.7 0.0217 E18.5 retina AATGATGCCT CGGCCCACAT TCTGGCAGTC (3) 14.5 0.0145 P0.5 retina AAGGAGCTGA AATGATGCCT CGGCCCACAT TCTGGCAGTC (3) 39.4 0.0394 P2.5 retina AATGATGCCT GTATGGGGTG TCTGGCAGTC (3) 21.1 0.0211 P4.5 retina AATGATGCCT TCTGGCAGTC (3) 11.9 0.0119 P6.5 retina AATGATGCCT GTATGGGGTG TCTGGCAGTC (3) 9.9 0.0099 P10.5 crx- retina AATGATGCCT GAGCAGCCTG (2) TCTGGCAGTC (3) 13.1 0.0131 P10.5 crx+ retina AATGATGCCT GTATGGGGTG TCTGGCAGTC (3) 30.7 0.0307 Adult retinal AATGATGCCT GAGCAGCCTG (2) GCATTGTCAA TCTGGCAGTC (3) 11.3 0.0113 ONL TCTGGCAGTC (3) 3.8 0.0038