Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.173953	D19Mgi11	DNA Segment, Chr 19, Mouse Genome Informatics 11	19		107113
Mm.173953	Smc6l1	SMC6 structural maintenance of chromosomes 6-like 1 (yeast)	12	12 A2	67241
Human Homolog	SMC6L1[SMC6 structural maintenance of chromosomes 6-like 1 (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTGTGTGTG (115) 27.7 0.0277 P8 Cb GC CCCTCCCCCC (6) 13.1 0.0131 P8 Cb GC AGATAATTTT (3) 1.6 0.0016 P8 Cb GC TACATATCTG (5) 1.6 0.0016 P8 Cb GC TGAGATGATA (5) 1.6 0.0016 Cb medulloblastoma TGTGTGTGTG (115) 30.1 0.0301 Cb medulloblastoma AGATAATTTT (3) 6.9 0.0069 Cb medulloblastoma CCCTCCCCCC (6) 6.9 0.0069 Cb medulloblastoma AAGAATTTGT (4) 4.6 0.0046 Cb medulloblastoma AGCTCCCTTC (2) 2.3 0.0023 Cb medulloblastoma TACCACACAC (2) 2.3 0.0023 P8 GC+1d culture TGTGTGTGTG (115) 27.4 0.0274 P8 GC+1d culture CCCTCCCCCC (6) 11.4 0.0114 P8 GC+1d culture CGCCATTACT (3) 6.8 0.0068 P8 GC+1d culture TACATATCTG (5) 4.6 0.0046 P8 GC+1d culture AGATAATTTT (3) 1.1 0.0011 P8 GC+1d culture TACCACACAC (2) 1.1 0.0011 P8 GC+SHH+1d culture TGTGTGTGTG (115) 28.1 0.0281 P8 GC+SHH+1d culture CCCTCCCCCC (6) 9.4 0.0094 P8 GC+SHH+1d culture CGCCATTACT (3) 3.5 0.0035 P8 GC+SHH+1d culture TACATATCTG (5) 2.3 0.0023 P8 GC+SHH+1d culture CTGCCACGTG (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTGTGACAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGAGATGATA (5) 1.2 0.0012 3T3 fibroblasts TGTGTGTGTG (115) 28 0.028 3T3 fibroblasts CGCCATTACT (3) 7 0.007 3T3 fibroblasts CCCTCCCCCC (6) 3.5 0.0035 3T3 fibroblasts CTGCCACGTG (2) 3.5 0.0035 3T3 fibroblasts TACCACACAC (2) 3.5 0.0035 3T3 fibroblasts TGCATTATGT (2) 3.5 0.0035 E15 cortex CCCTCCCCCC (6) 19.8 0.0198 E15 cortex TACCACACAC (2) 4.9 0.0049 P1 cortex TGTGTGTGTG (115) 18.2 0.0182 P1 cortex AAGAATTTGT (4) 4.5 0.0045 P1 cortex CGCCATTACT (3) 4.5 0.0045 P1 cortex TGCATTATGT (2) 4.5 0.0045 Hypothalamus TGTGTGTGTG (115) 25.4 0.0254 Hypothalamus CGCCATTACT (3) 5.4 0.0054 Hypothalamus AGATAATTTT (3) 3.6 0.0036 Hypothalamus AAGAATTTGT (4) 1.8 0.0018 Hypothalamus GCTGTGACAG (3) 1.8 0.0018 Hypothalamus TACCACACAC (2) 1.8 0.0018 Hypothalamus TGAGATGATA (5) 1.8 0.0018 E12.5 retina TGTGTGTGTG (115) 43.2 0.0432 E12.5 retina CCCTCCCCCC (6) 9.4 0.0094 E12.5 retina TACCACACAC (2) 3.8 0.0038 E12.5 retina CTGCCACGTG (2) 1.9 0.0019 E14.5 retina TGTGTGTGTG (115) 54.7 0.0547 E14.5 retina CAATCCCAAA (2) 1.8 0.0018 E14.5 retina CCCTCCCCCC (6) 1.8 0.0018 E14.5 retina CGCCATTACT (3) 1.8 0.0018 E14.5 retina GCTGTGACAG (3) 1.8 0.0018 E14.5 retina TACATATCTG (5) 1.8 0.0018 E16.5 retina TGTGTGTGTG (115) 39.8 0.0398 E16.5 retina CCCTCCCCCC (6) 10.9 0.0109 E16.5 retina TACATATCTG (5) 5.4 0.0054 E16.5 retina TACCACACAC (2) 1.8 0.0018 E16.5 retina TGCATTATGT (2) 1.8 0.0018 E18.5 retina TGTGTGTGTG (115) 47.3 0.0473 E18.5 retina CCCTCCCCCC (6) 7.3 0.0073 E18.5 retina CGCCATTACT (3) 3.6 0.0036 E18.5 retina TACATATCTG (5) 3.6 0.0036 E18.5 retina TGCATTATGT (2) 3.6 0.0036 E18.5 retina AGATAATTTT (3) 1.8 0.0018 E18.5 retina AGCTCCCTTC (2) 1.8 0.0018 P0.5 retina TGTGTGTGTG (115) 21.6 0.0216 P0.5 retina CCCTCCCCCC (6) 17.7 0.0177 P0.5 retina AGAGTGGAGC (4) 5.9 0.0059 P0.5 retina CAATCCCAAA (2) 2 0.002 P0.5 retina CGCCATTACT (3) 2 0.002 P2.5 retina TGTGTGTGTG (115) 35.2 0.0352 P2.5 retina CCCTCCCCCC (6) 5.3 0.0053 P2.5 retina TACATATCTG (5) 5.3 0.0053 P2.5 retina TTAAAGAAAC (2) 1.8 0.0018 P4.5 retina TGTGTGTGTG (115) 47.6 0.0476 P4.5 retina TACATATCTG (5) 11.9 0.0119 P4.5 retina CCCTCCCCCC (6) 7.9 0.0079 P4.5 retina CGCCATTACT (3) 2 0.002 P4.5 retina TGCATTATGT (2) 2 0.002 P6.5 retina TGTGTGTGTG (115) 41.7 0.0417 P6.5 retina CGCCATTACT (3) 3.3 0.0033 P6.5 retina TACATATCTG (5) 3.3 0.0033 P6.5 retina AGATAATTTT (3) 1.7 0.0017 P6.5 retina AGCTCCCTTC (2) 1.7 0.0017 P6.5 retina CCCTCCCCCC (6) 1.7 0.0017 P6.5 retina TTAAAGAAAC (2) 1.7 0.0017 P10.5 crx- retina TGTGTGTGTG (115) 59.4 0.0594 P10.5 crx- retina AGCTCCCTTC (2) 1.9 0.0019 P10.5 crx- retina CCCTCCCCCC (6) 1.9 0.0019 P10.5 crx+ retina TGTGTGTGTG (115) 44.2 0.0442 P10.5 crx+ retina CCCTCCCCCC (6) 7.7 0.0077 P10.5 crx+ retina CGCCATTACT (3) 3.8 0.0038 P10.5 crx+ retina GCTGTGACAG (3) 1.9 0.0019 Adult retinal TGTGTGTGTG (115) 53.7 0.0537 Adult retinal CGCCATTACT (3) 9.3 0.0093 Adult retinal CCCTCCCCCC (6) 1.9 0.0019 ONL TGTGTGTGTG (115) 23 0.023 ONL CCCTCCCCCC (6) 5.7 0.0057 ONL CAATCCCAAA (2) 1.9 0.0019 ONL TGAGATGATA (5) 1.9 0.0019 ONL TGCATTATGT (2) 1.9 0.0019 ONL TTAAAGAAAC (2) 1.9 0.0019