Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.180003	Rps27a	ribosomal protein S27a	9		78294
Gene Ontology	intracellular | nucleus | protein biosynthesis | ribosome | structural constituent of ribosome
Human Homolog	RPS27A[ribosomal protein S27a]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 94 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGAAGCCACT 347.5 0.3475 P8 Cb GC AACTAAAAAA (12) 8.2 0.0082 P8 Cb GC AAAACTCCAG (3) 6.5 0.0065 P8 Cb GC ACGGGAAAAA (6) 6.5 0.0065 P8 Cb GC GAAAGCCACT 1.6 0.0016 P8 Cb GC GAAGCCACTT (2) 1.6 0.0016 P8 Cb GC GGAAGCACTT (2) 1.6 0.0016 P8 Cb GC GGAAGCCCCT (4) 1.6 0.0016 Cb medulloblastoma GGAAGCCACT 173.4 0.1734 Cb medulloblastoma AAAACTCCAG (3) 6.9 0.0069 Cb medulloblastoma ACGGGAAAAA (6) 4.6 0.0046 Cb medulloblastoma AACTAAAAAA (12) 2.3 0.0023 P8 GC+1d culture GGAAGCCACT 172.4 0.1724 P8 GC+1d culture ACGGGAAAAA (6) 2.3 0.0023 P8 GC+1d culture GAAGCCACTT (2) 2.3 0.0023 P8 GC+1d culture AAAACTCCAG (3) 1.1 0.0011 P8 GC+1d culture AACTAAAAAA (12) 1.1 0.0011 P8 GC+1d culture AGAGCTTTAA (11) 1.1 0.0011 P8 GC+1d culture GAAAGCCACT 1.1 0.0011 P8 GC+SHH+1d culture GGAAGCCACT 237.7 0.2377 P8 GC+SHH+1d culture AACTAAAAAA (12) 3.5 0.0035 P8 GC+SHH+1d culture ACGGGAAAAA (6) 3.5 0.0035 P8 GC+SHH+1d culture AGAGCTTTAA (11) 3.5 0.0035 P8 GC+SHH+1d culture GAAGCCACTT (2) 2.3 0.0023 P8 GC+SHH+1d culture GAAAGCCACT 1.2 0.0012 3T3 fibroblasts GGAAGCCACT 143.7 0.1437 3T3 fibroblasts AAAACTCCAG (3) 3.5 0.0035 E15 cortex GGAAGCCACT 148.4 0.1484 P1 cortex GGAAGCCACT 45.5 0.0455 P1 cortex AAAACTCCAG (3) 9.1 0.0091 P1 cortex ACGGGAAAAA (6) 9.1 0.0091 P1 cortex AGAGCTTTAA (11) 4.5 0.0045 P1 cortex GAAAGCCACT 4.5 0.0045 P1 cortex GGAAGCCCCT (4) 4.5 0.0045 Hypothalamus GGAAGCCACT 148.5 0.1485 Hypothalamus AAAACTCCAG (3) 5.4 0.0054 Hypothalamus ACGGGAAAAA (6) 5.4 0.0054 Hypothalamus GAAGCCACTT (2) 3.6 0.0036 Hypothalamus GGAAGCACTT (2) 1.8 0.0018 E12.5 retina GGAAGCCACT 276 0.276 E12.5 retina GAAGCCACTT (2) 5.6 0.0056 E12.5 retina AAAACTCCAG (3) 3.8 0.0038 E12.5 retina ACGGGAAAAA (6) 3.8 0.0038 E12.5 retina GGAAGCCCCT (4) 1.9 0.0019 E12.5 retina GGGAAGCCAC 1.9 0.0019 E14.5 retina GGAAGCCACT 165.8 0.1658 E14.5 retina AAAACTCCAG (3) 9.1 0.0091 E14.5 retina AACTAAAAAA (12) 3.6 0.0036 E14.5 retina ACGGGAAAAA (6) 1.8 0.0018 E16.5 retina GGAAGCCACT 211.9 0.2119 E16.5 retina AAAACTCCAG (3) 10.9 0.0109 E16.5 retina GGAAGCCCCT (4) 3.6 0.0036 E18.5 retina GGAAGCCACT 247.4 0.2474 E18.5 retina AAAACTCCAG (3) 14.6 0.0146 E18.5 retina GGAAGCCCCT (4) 5.5 0.0055 E18.5 retina AACTAAAAAA (12) 3.6 0.0036 E18.5 retina GAAGCCACTT (2) 3.6 0.0036 E18.5 retina ACGGGAAAAA (6) 1.8 0.0018 E18.5 retina AGAGCTTTAA (11) 1.8 0.0018 E18.5 retina GGGAAGCCAC 1.8 0.0018 P0.5 retina GGAAGCCACT 225.7 0.2257 P0.5 retina ACGGGAAAAA (6) 5.9 0.0059 P0.5 retina GAAGCCACTT (2) 2 0.002 P2.5 retina GGAAGCCACT 212.9 0.2129 P2.5 retina AAAACTCCAG (3) 3.5 0.0035 P2.5 retina ACGGGAAAAA (6) 3.5 0.0035 P2.5 retina AGAGCTTTAA (11) 1.8 0.0018 P2.5 retina GGGAAGCCAC 1.8 0.0018 P4.5 retina GGAAGCCACT 164.5 0.1645 P4.5 retina ACGGGAAAAA (6) 9.9 0.0099 P4.5 retina AAAACTCCAG (3) 5.9 0.0059 P4.5 retina GAAGCCACTT (2) 4 0.004 P4.5 retina AACTAAAAAA (12) 2 0.002 P4.5 retina GGAAGCCCCT (4) 2 0.002 P6.5 retina GGAAGCCACT 81.7 0.0817 P6.5 retina ACGGGAAAAA (6) 8.3 0.0083 P6.5 retina AGAGCTTTAA (11) 3.3 0.0033 P6.5 retina GAAAGCCACT 1.7 0.0017 P10.5 crx- retina GGAAGCCACT 183.9 0.1839 P10.5 crx- retina AAAACTCCAG (3) 3.7 0.0037 P10.5 crx- retina GGGAAGCCAC 3.7 0.0037 P10.5 crx- retina ACGGGAAAAA (6) 1.9 0.0019 P10.5 crx- retina GGAAGCCCCT (4) 1.9 0.0019 P10.5 crx+ retina GGAAGCCACT 132.7 0.1327 P10.5 crx+ retina ACGGGAAAAA (6) 5.8 0.0058 P10.5 crx+ retina AACTAAAAAA (12) 3.8 0.0038 P10.5 crx+ retina GAAGCCACTT (2) 1.9 0.0019 P10.5 crx+ retina GGGAAGCCAC 1.9 0.0019 Adult retinal GGAAGCCACT 96.3 0.0963 Adult retinal GGAAGCCCCT (4) 1.9 0.0019 ONL GGAAGCCACT 59.4 0.0594 ONL AACTAAAAAA (12) 5.7 0.0057 ONL ACGGGAAAAA (6) 3.8 0.0038 ONL GGAAGCACTT (2) 1.9 0.0019