Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.180458	Rpl13a	ribosomal protein L13a	7	7 69.0 cM	22121
Human Homolog	RPL13A[ribosomal protein L13a]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 231 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AGGTCGGGTG (2) 110.9 0.1109 P8 Cb GC AGCTGGGGTT 14.7 0.0147 P8 Cb GC CTGCCCCACA 6.5 0.0065 P8 Cb GC CAGCAGAAGC (9) 4.9 0.0049 P8 Cb GC CCTGACTGGC (6) 4.9 0.0049 P8 Cb GC AGGCCGGGTG (2) 1.6 0.0016 P8 Cb GC ATGTCGGGTG 1.6 0.0016 P8 Cb GC CCTGCCTTGG (4) 1.6 0.0016 P8 Cb GC CGCCAGACGC 1.6 0.0016 P8 Cb GC CGGTAGATGC (4) 1.6 0.0016 P8 Cb GC TGGCTCAGGC (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AGGTCGGGTG (2) 71.7 0.0717 Cb medulloblastoma TGGCTCAGGC (4) 6.9 0.0069 Cb medulloblastoma AGCTGGGGTT 4.6 0.0046 Cb medulloblastoma GGGGATCTGT (3) 4.6 0.0046 Cb medulloblastoma AAGAAAAAGA (6) 2.3 0.0023 Cb medulloblastoma AGGCCGGGTG (2) 2.3 0.0023 Cb medulloblastoma CCTGCCTGGG (3) 2.3 0.0023 Cb medulloblastoma CGCCAGACGC 2.3 0.0023 Cb medulloblastoma CTGCATCATT 2.3 0.0023 Cb medulloblastoma CTGTCCCACA (2) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture AGGTCGGGTG (2) 119.9 0.1199 P8 GC+1d culture AGCTGGGGTT 24 0.024 P8 GC+1d culture AGGTCGGGCG 2.3 0.0023 P8 GC+1d culture CCTGCCTTGG (4) 2.3 0.0023 P8 GC+1d culture CGGTAGATGC (4) 2.3 0.0023 P8 GC+1d culture AGAGCATTAA (8) 1.1 0.0011 P8 GC+1d culture AGGCCGGGTG (2) 1.1 0.0011 P8 GC+1d culture TGGCTCAGGC (4) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AGGTCGGGTG (2) 115.9 0.1159 P8 GC+SHH+1d culture AGCTGGGGTT 15.2 0.0152 P8 GC+SHH+1d culture CAGCAGAAGC (9) 4.7 0.0047 P8 GC+SHH+1d culture CCCAAAAAAA (19) 3.5 0.0035 P8 GC+SHH+1d culture CCTCGCACAG 2.3 0.0023 P8 GC+SHH+1d culture CGCCAGACGC 2.3 0.0023 P8 GC+SHH+1d culture CGGTAGATGC (4) 2.3 0.0023 P8 GC+SHH+1d culture AAGAAAAAGA (6) 1.2 0.0012 P8 GC+SHH+1d culture AGAGCATTAA (8) 1.2 0.0012 P8 GC+SHH+1d culture AGAGGGGCAG (5) 1.2 0.0012 P8 GC+SHH+1d culture AGGCAAACAG (2) 1.2 0.0012 P8 GC+SHH+1d culture CCTGACTGGC (6) 1.2 0.0012 P8 GC+SHH+1d culture CTGCCCCACA 1.2 0.0012 P8 GC+SHH+1d culture TGGCTCAGGC (4) 1.2 0.0012 3T3 fibroblasts AGGTCGGGTG (2) 290.9 0.2909 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts AGCTGGGGTT 24.5 0.0245 3T3 fibroblasts CCTCGCACAG 21 0.021 3T3 fibroblasts CTGCCCCACA 10.5 0.0105 3T3 fibroblasts TGGCTCAGGC (4) 10.5 0.0105 3T3 fibroblasts AGAGGGGCAG (5) 7 0.007 3T3 fibroblasts CGCCAGACGC 7 0.007 3T3 fibroblasts ATGTCGGGTG 3.5 0.0035 3T3 fibroblasts CCTGCCTGGG (3) 3.5 0.0035 E15 cortex AGGTCGGGTG (2) 242.4 0.2424 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex AGCTGGGGTT 19.8 0.0198 E15 cortex CTGCCCCACA 9.9 0.0099 E15 cortex CAGCAGAAGC (9) 4.9 0.0049 E15 cortex CCCAAAAAAA (19) 4.9 0.0049 E15 cortex CCTGACTGGC (6) 4.9 0.0049 E15 cortex CCTGCCTTGG (4) 4.9 0.0049 E15 cortex CGGTAGATGC (4) 4.9 0.0049 E15 cortex TGGCTCAGGC (4) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AGGTCGGGTG (2) 50 0.05 P1 cortex AGCTGGGGTT 9.1 0.0091 P1 cortex AGGCAAACAG (2) 4.5 0.0045 P1 cortex CAGGTGGTGC (3) 4.5 0.0045 P1 cortex CCTGACTGGC (6) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AGGTCGGGTG (2) 50.7 0.0507 Hypothalamus GGGGATCTGT (3) 9.1 0.0091 Hypothalamus CAGCAGAAGC (9) 7.2 0.0072 Hypothalamus AGCTGGGGTT 5.4 0.0054 Hypothalamus CCTCGCACAG 3.6 0.0036 Hypothalamus CGGTAGATGC (4) 3.6 0.0036 Hypothalamus TGGCTCAGGC (4) 3.6 0.0036 Hypothalamus AGGCAAACAG (2) 1.8 0.0018 Hypothalamus CAGGTGGTGC (3) 1.8 0.0018 Hypothalamus CGCCAGACGC 1.8 0.0018 Hypothalamus CTGCCCCACA 1.8 0.0018 Hypothalamus CTGGCCAAAA (5) 1.8 0.0018 Hypothalamus TGGTTGGGTG (2) 1.8 0.0018 E12.5 retina AGGTCGGGTG (2) 189.6 0.1896 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AGCTGGGGTT 20.7 0.0207 E12.5 retina CCTCGCACAG 11.3 0.0113 E12.5 retina CCTGACTGGC (6) 7.5 0.0075 E12.5 retina AGAGCATTAA (8) 3.8 0.0038 E12.5 retina CAGGTGGTGC (3) 1.9 0.0019 E12.5 retina CCTGCCTGGG (3) 1.9 0.0019 E12.5 retina CCTGCCTTGG (4) 1.9 0.0019 E12.5 retina CGCCAGACGC 1.9 0.0019 E12.5 retina CGGTAGATGC (4) 1.9 0.0019 E12.5 retina CTGCCCCACA 1.9 0.0019 E12.5 retina GGGGATCAGT (9) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AGGTCGGGTG (2) 58.3 0.0583 E14.5 retina AGCTGGGGTT 10.9 0.0109 E14.5 retina CCTGACTGGC (6) 7.3 0.0073 E14.5 retina AGGCAAACAG (2) 5.5 0.0055 E14.5 retina CGCCAGACGC 5.5 0.0055 E14.5 retina TGGCTCAGGC (4) 5.5 0.0055 E14.5 retina CAGGTGGTGC (3) 3.6 0.0036 E14.5 retina CGGTAGATGC (4) 3.6 0.0036 E14.5 retina AGTGTTTATT (4) 1.8 0.0018 E14.5 retina CAGCAGAAGC (9) 1.8 0.0018 E14.5 retina CCTCGCACAG 1.8 0.0018 E14.5 retina CCTGCCTGGG (3) 1.8 0.0018 E14.5 retina CCTGCCTTGG (4) 1.8 0.0018 E14.5 retina CTGTCCCACA (2) 1.8 0.0018 E14.5 retina TGGTTGGGTG (2) 1.8 0.0018 E16.5 retina AGGTCGGGTG (2) 99.6 0.0996 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina CGGTAGATGC (4) 12.7 0.0127 E16.5 retina AGCTGGGGTT 9.1 0.0091 E16.5 retina AGGCAAACAG (2) 7.2 0.0072 E16.5 retina CGCCAGACGC 5.4 0.0054 E16.5 retina TGGCTCAGGC (4) 5.4 0.0054 E16.5 retina CAGCAGAAGC (9) 3.6 0.0036 E16.5 retina CCTGCCTTGG (4) 3.6 0.0036 E16.5 retina GGATGAATCA (3) 3.6 0.0036 E16.5 retina AGGTCGGGCG 1.8 0.0018 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina CCCAAAAAAA (19) 1.8 0.0018 E16.5 retina CCTCGCACAG 1.8 0.0018 E16.5 retina CCTGACTGGC (6) 1.8 0.0018 E16.5 retina CCTGCCTGGG (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina AGGTCGGGTG (2) 74.6 0.0746 E18.5 retina AGCTGGGGTT 18.2 0.0182 E18.5 retina AGAGCATTAA (8) 3.6 0.0036 E18.5 retina AGGCAAACAG (2) 3.6 0.0036 E18.5 retina CAGCAGAAGC (9) 3.6 0.0036 E18.5 retina CCCAAAAAAA (19) 3.6 0.0036 E18.5 retina CGCCAGACGC 3.6 0.0036 E18.5 retina CCTCGCACAG 1.8 0.0018 E18.5 retina CCTGACTGGC (6) 1.8 0.0018 E18.5 retina CGGTAGATGC (4) 1.8 0.0018 E18.5 retina CTGGCCAAAA (5) 1.8 0.0018 E18.5 retina TGGCTCAGGC (4) 1.8 0.0018 P0.5 retina AGGTCGGGTG (2) 204.1 0.2041 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AGGCAAACAG (2) 9.8 0.0098 P0.5 retina AGCTGGGGTT 7.9 0.0079 P0.5 retina CCTCGCACAG 7.9 0.0079 P0.5 retina CGCCAGACGC 5.9 0.0059 P0.5 retina AGGTCGGGCG 3.9 0.0039 P0.5 retina CAGCAGAAGC (9) 3.9 0.0039 P0.5 retina AGTGTTTATT (4) 2 0.002 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina CCCAAAAAAA (19) 2 0.002 P0.5 retina CCTGCCTGGG (3) 2 0.002 P0.5 retina CCTGCCTTGG (4) 2 0.002 P0.5 retina CGGTAGATGC (4) 2 0.002 P0.5 retina GGATGAATCA (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AGGTCGGGTG (2) 109.1 0.1091 P2.5 retina AGCTGGGGTT 8.8 0.0088 P2.5 retina CCTGCCTTGG (4) 5.3 0.0053 P2.5 retina TGGCTCAGGC (4) 5.3 0.0053 P2.5 retina CCTCGCACAG 3.5 0.0035 P2.5 retina CTGGCCAAAA (5) 3.5 0.0035 P2.5 retina AAGAAAAAGA (6) 1.8 0.0018 P2.5 retina CAGCAGAAGC (9) 1.8 0.0018 P2.5 retina CCCAAAAAAA (19) 1.8 0.0018 P2.5 retina CCTGACTGGC (6) 1.8 0.0018 P2.5 retina CTGTCCCACA (2) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AGGTCGGGTG (2) 55.5 0.0555 P4.5 retina AGCTGGGGTT 5.9 0.0059 P4.5 retina CGCCAGACGC 4 0.004 P4.5 retina AGGCAAACAG (2) 2 0.002 P4.5 retina AGTGTTTATT (4) 2 0.002 P4.5 retina CCCAAAAAAA (19) 2 0.002 P4.5 retina CCTCGCACAG 2 0.002 P4.5 retina TGGCTCAGGC (4) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina AGGTCGGGTG (2) 88.4 0.0884 P6.5 retina AGCTGGGGTT 6.7 0.0067 P6.5 retina CCCAAAAAAA (19) 3.3 0.0033 P6.5 retina CCTCGCACAG 3.3 0.0033 P6.5 retina CGCCAGACGC 3.3 0.0033 P6.5 retina TGGCTCAGGC (4) 3.3 0.0033 P6.5 retina AGGCCGGGTG (2) 1.7 0.0017 P6.5 retina CAGGTGGTGC (3) 1.7 0.0017 P6.5 retina CCTGCCTTGG (4) 1.7 0.0017 P10.5 crx- retina AGGTCGGGTG (2) 152.3 0.1523 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AGCTGGGGTT 20.4 0.0204 P10.5 crx- retina AGGCAAACAG (2) 3.7 0.0037 P10.5 crx- retina CCTGACTGGC (6) 3.7 0.0037 P10.5 crx- retina CGGTAGATGC (4) 3.7 0.0037 P10.5 crx- retina CTGCATCATT 3.7 0.0037 P10.5 crx- retina CCTCGCACAG 1.9 0.0019 P10.5 crx- retina CTGCCCCACA 1.9 0.0019 P10.5 crx- retina GGGGATCAGT (9) 1.9 0.0019 P10.5 crx- retina TGGCTCAGGC (4) 1.9 0.0019 P10.5 crx+ retina AGGTCGGGTG (2) 103.8 0.1038 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AGCTGGGGTT 1.9 0.0019 P10.5 crx+ retina CCTCGCACAG 1.9 0.0019 P10.5 crx+ retina CCTGACTGGC (6) 1.9 0.0019 P10.5 crx+ retina CTGTCCCACA (2) 1.9 0.0019 P10.5 crx+ retina GGATGAATCA (3) 1.9 0.0019 P10.5 crx+ retina GGGGATCAGT (9) 1.9 0.0019 Adult retinal AGGTCGGGTG (2) 96.3 0.0963 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal ATGAACACTG (30) 11.1 0.0111 Adult retinal CCTCGCACAG 7.4 0.0074 Adult retinal CCTGCCTGGG (3) 7.4 0.0074 Adult retinal AGCTGGGGTT 5.6 0.0056 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal ATGTCGGGTG 1.9 0.0019 Adult retinal CAGGTGGTGC (3) 1.9 0.0019 Adult retinal CCCAAAAAAA (19) 1.9 0.0019 Adult retinal CCTGACTGGC (6) 1.9 0.0019 Adult retinal CCTGCCTTGG (4) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AGGTCGGGTG (2) 55.5 0.0555 ONL ATGAACACTG (30) 13.4 0.0134 ONL CCTGCCTGGG (3) 3.8 0.0038 ONL TGGTTGGGTG (2) 3.8 0.0038 ONL AGCTGGGGTT 1.9 0.0019 ONL AGGCAAACAG (2) 1.9 0.0019 ONL AGGCCGGGTG (2) 1.9 0.0019 ONL CCCAAAAAAA (19) 1.9 0.0019