Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1963	Srrm1	serine/arginine repetitive matrix 1	4		51796
Gene Ontology	nuclear matrix | nuclear mRNA splicing, via spliceosome | pre-mRNA splicing factor activity | protein binding | RNA binding | spliceosome complex
Human Homolog	SRRM1[serine/arginine repetitive matrix 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAAAAAAAA (35) 22.8 0.0228 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC TTTCTCCTTA 3.3 0.0033 P8 Cb GC GACCGCAGGG (5) 1.6 0.0016 P8 Cb GC TTTTAAAAAA (26) 1.6 0.0016 Cb medulloblastoma CCAAAAAAAA (35) 90.2 0.0902 Cb medulloblastoma TTTTAAAAAA (26) 9.2 0.0092 Cb medulloblastoma TTTAAAAAAA (34) 6.9 0.0069 Cb medulloblastoma GAGGGCCAGA (4) 4.6 0.0046 Cb medulloblastoma GACCGCAGGG (5) 2.3 0.0023 Cb medulloblastoma GTGAACTTCA (3) 2.3 0.0023 Cb medulloblastoma TTTCTCCTTA 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture CCAAAAAAAA (35) 38.8 0.0388 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture TTTCTCCTTA 4.6 0.0046 P8 GC+1d culture ACGGGAGCCA (4) 3.4 0.0034 P8 GC+1d culture GACCGCAGGG (5) 2.3 0.0023 P8 GC+1d culture TTTTAAAAAA (26) 2.3 0.0023 P8 GC+1d culture TTTGTTATGT 1.1 0.0011 P8 GC+SHH+1d culture CCAAAAAAAA (35) 39.8 0.0398 P8 GC+SHH+1d culture TTTTAAAAAA (26) 10.5 0.0105 P8 GC+SHH+1d culture TTTAAAAAAA (34) 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture TTTCTCCTTA 3.5 0.0035 P8 GC+SHH+1d culture ACGGGAGCCA (4) 1.2 0.0012 3T3 fibroblasts GGAGAGCTGT (5) 14 0.014 3T3 fibroblasts ACGGGAGCCA (4) 3.5 0.0035 3T3 fibroblasts GTGAACTTCA (3) 3.5 0.0035 E15 cortex CCAAAAAAAA (35) 9.9 0.0099 E15 cortex GAGGGCCAGA (4) 4.9 0.0049 E15 cortex GGAGAGCTGT (5) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex CCAAAAAAAA (35) 40.9 0.0409 P1 cortex TTTTAAAAAA (26) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus CCAAAAAAAA (35) 38 0.038 Hypothalamus TTTAAAAAAA (34) 10.9 0.0109 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TTTCTCCTTA 5.4 0.0054 Hypothalamus TTTTAAAAAA (26) 1.8 0.0018 E12.5 retina CCAAAAAAAA (35) 16.9 0.0169 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina TTTCTCCTTA 5.6 0.0056 E12.5 retina ACGGGAGCCA (4) 1.9 0.0019 E12.5 retina GACCGCAGGG (5) 1.9 0.0019 E12.5 retina TTTAAAAAAA (34) 1.9 0.0019 E12.5 retina TTTTAAAAAA (26) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina CCAAAAAAAA (35) 18.2 0.0182 E14.5 retina TTTAAAAAAA (34) 9.1 0.0091 E14.5 retina TTTTAAAAAA (26) 3.6 0.0036 E14.5 retina GTGAACTTCA (3) 1.8 0.0018 E14.5 retina TTTCTCCTTA 1.8 0.0018 E16.5 retina CCAAAAAAAA (35) 16.3 0.0163 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina TTTCTCCTTA 3.6 0.0036 E16.5 retina ACGGGAGCCA (4) 1.8 0.0018 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina GAGGGCCAGA (4) 1.8 0.0018 E16.5 retina GGAGAGCTGT (5) 1.8 0.0018 E16.5 retina TTTAAAAAAA (34) 1.8 0.0018 E18.5 retina CCAAAAAAAA (35) 38.2 0.0382 E18.5 retina TTTAAAAAAA (34) 10.9 0.0109 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina TTTTAAAAAA (26) 9.1 0.0091 E18.5 retina GACCGCAGGG (5) 1.8 0.0018 E18.5 retina GGAGAGCTGT (5) 1.8 0.0018 E18.5 retina GTGAACTTCA (3) 1.8 0.0018 E18.5 retina TTTCTCCTTA 1.8 0.0018 P0.5 retina CCAAAAAAAA (35) 29.4 0.0294 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina ACGGGAGCCA (4) 5.9 0.0059 P0.5 retina TTTCTCCTTA 5.9 0.0059 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina TTTAAAAAAA (34) 2 0.002 P0.5 retina TTTGTTATGT 2 0.002 P2.5 retina CCAAAAAAAA (35) 44 0.044 P2.5 retina TTTCTCCTTA 12.3 0.0123 P2.5 retina ACGGGAGCCA (4) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina TTTTAAAAAA (26) 5.3 0.0053 P2.5 retina GACCGCAGGG (5) 1.8 0.0018 P2.5 retina TTTAAAAAAA (34) 1.8 0.0018 P4.5 retina CCAAAAAAAA (35) 39.6 0.0396 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina TTTCTCCTTA 7.9 0.0079 P4.5 retina TTTAAAAAAA (34) 5.9 0.0059 P4.5 retina TTTTAAAAAA (26) 4 0.004 P6.5 retina CCAAAAAAAA (35) 38.3 0.0383 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina TTTAAAAAAA (34) 6.7 0.0067 P6.5 retina TTTTAAAAAA (26) 5 0.005 P6.5 retina TTTCTCCTTA 3.3 0.0033 P10.5 crx- retina CCAAAAAAAA (35) 14.9 0.0149 P10.5 crx- retina TTTCTCCTTA 1.9 0.0019 P10.5 crx- retina TTTTAAAAAA (26) 1.9 0.0019 P10.5 crx+ retina CCAAAAAAAA (35) 38.4 0.0384 P10.5 crx+ retina ACGGGAGCCA (4) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina GTGAACTTCA (3) 1.9 0.0019 P10.5 crx+ retina TTTTAAAAAA (26) 1.9 0.0019 Adult retinal CCAAAAAAAA (35) 35.2 0.0352 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal TTTCTCCTTA 5.6 0.0056 Adult retinal ACGGGAGCCA (4) 3.7 0.0037 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal GACCGCAGGG (5) 1.9 0.0019 ONL CCAAAAAAAA (35) 7.7 0.0077 ONL TTTAAAAAAA (34) 7.7 0.0077 ONL TTTCTCCTTA 7.7 0.0077 ONL ACGGGAGCCA (4) 3.8 0.0038 ONL TTTTAAAAAA (26) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL GACCGCAGGG (5) 1.9 0.0019 ONL TTTGTTATGT 1.9 0.0019