Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.213408
D16Ium21e
DNA segment, Chr 16, Indiana University Medical 21, expressed
16
16 67.4 cM
28186
Mm.213408
Ttc3
tetratricopeptide repeat domain 3
16
16 67.9 cM
22129
Mm.213408
2610202A04Rik
RIKEN cDNA 2610202A04 gene
16
70444
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 81 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTACACTT
(
4
)
16.3
0.0163
P8 Cb GC
TGAGAACTGC
(
5
)
4.9
0.0049
P8 Cb GC
TGGCACTGTA
(
3
)
3.3
0.0033
P8 Cb GC
AAAGCTAAAG
(
3
)
1.6
0.0016
P8 Cb GC
AAGATGAGGG
(
4
)
1.6
0.0016
P8 Cb GC
CAATCTTGTA
(
3
)
1.6
0.0016
P8 Cb GC
TTTTGAGTGA
(
3
)
1.6
0.0016
Cb medulloblastoma
CCTTACACTT
(
4
)
16.2
0.0162
Cb medulloblastoma
AAAGCTAAAG
(
3
)
2.3
0.0023
Cb medulloblastoma
TGAACCTTGA
(
3
)
2.3
0.0023
Cb medulloblastoma
TGAGAACTGC
(
5
)
2.3
0.0023
Cb medulloblastoma
TGGCACTGTA
(
3
)
2.3
0.0023
P8 GC+1d culture
CCTTACACTT
(
4
)
26.3
0.0263
P8 GC+1d culture
TGGCACTGTA
(
3
)
10.3
0.0103
P8 GC+SHH+1d culture
CCTTACACTT
(
4
)
24.6
0.0246
P8 GC+SHH+1d culture
TGGCACTGTA
(
3
)
5.9
0.0059
P8 GC+SHH+1d culture
TGAACCTTGA
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTTGAGTGA
(
3
)
1.2
0.0012
3T3 fibroblasts
TGAGAACTGC
(
5
)
3.5
0.0035
E15 cortex
TGAGAACTGC
(
5
)
39.6
0.0396
E15 cortex
CCTTACACTT
(
4
)
14.8
0.0148
E15 cortex
CAATCTTGTA
(
3
)
4.9
0.0049
E15 cortex
TTTTGAGTGA
(
3
)
4.9
0.0049
P1 cortex
CCTTACACTT
(
4
)
27.3
0.0273
P1 cortex
TTTTGAGTGA
(
3
)
18.2
0.0182
P1 cortex
TGGCACTGTA
(
3
)
9.1
0.0091
P1 cortex
AAGATGAGGG
(
4
)
4.5
0.0045
P1 cortex
CAATCTTGTA
(
3
)
4.5
0.0045
P1 cortex
GAAGCTCTCA
(
4
)
4.5
0.0045
Hypothalamus
CCTTACACTT
(
4
)
27.2
0.0272
Hypothalamus
TGGCACTGTA
(
3
)
10.9
0.0109
Hypothalamus
TTTTGAGTGA
(
3
)
3.6
0.0036
Hypothalamus
AAAGCTAAAG
(
3
)
1.8
0.0018
Hypothalamus
GAAGCTCTCA
(
4
)
1.8
0.0018
E12.5 retina
CCTTACACTT
(
4
)
13.1
0.0131
E12.5 retina
TTTTGAGTGA
(
3
)
3.8
0.0038
E12.5 retina
AAAGCTAAAG
(
3
)
1.9
0.0019
E12.5 retina
TGGCACTGTA
(
3
)
1.9
0.0019
E14.5 retina
CCTTACACTT
(
4
)
21.9
0.0219
E14.5 retina
GATGACTTTG
(
5
)
1.8
0.0018
E14.5 retina
TGGCACTGTA
(
3
)
1.8
0.0018
E16.5 retina
CCTTACACTT
(
4
)
19.9
0.0199
E16.5 retina
AAGATGAGGG
(
4
)
5.4
0.0054
E16.5 retina
TGGCACTGTA
(
3
)
5.4
0.0054
E16.5 retina
AAAGCTAAAG
(
3
)
3.6
0.0036
E16.5 retina
TTTTGAGTGA
(
3
)
1.8
0.0018
E18.5 retina
CCTTACACTT
(
4
)
18.2
0.0182
E18.5 retina
GAAGCTCTCA
(
4
)
1.8
0.0018
E18.5 retina
TGGCACTGTA
(
3
)
1.8
0.0018
P0.5 retina
CCTTACACTT
(
4
)
21.6
0.0216
P0.5 retina
GATGACTTTG
(
5
)
2
0.002
P0.5 retina
TGAGAACTGC
(
5
)
2
0.002
P0.5 retina
TGGCACTGTA
(
3
)
2
0.002
P2.5 retina
CCTTACACTT
(
4
)
31.7
0.0317
P2.5 retina
TGGCACTGTA
(
3
)
3.5
0.0035
P2.5 retina
AAAGCTAAAG
(
3
)
1.8
0.0018
P2.5 retina
AAGATGAGGG
(
4
)
1.8
0.0018
P2.5 retina
CACTACACTG
(
4
)
1.8
0.0018
P2.5 retina
TGAACCTTGA
(
3
)
1.8
0.0018
P2.5 retina
TGAGAACTGC
(
5
)
1.8
0.0018
P4.5 retina
CCTTACACTT
(
4
)
19.8
0.0198
P4.5 retina
GATGAGTTTG
(
3
)
2
0.002
P4.5 retina
TGAGAACTGC
(
5
)
2
0.002
P6.5 retina
CCTTACACTT
(
4
)
33.3
0.0333
P6.5 retina
TTTTGAGTGA
(
3
)
5
0.005
P6.5 retina
CACTACACTG
(
4
)
1.7
0.0017
P6.5 retina
GATGACTTTG
(
5
)
1.7
0.0017
P6.5 retina
TGAGAACTGC
(
5
)
1.7
0.0017
P10.5 crx- retina
CCTTACACTT
(
4
)
20.4
0.0204
P10.5 crx- retina
TGAACCTTGA
(
3
)
1.9
0.0019
P10.5 crx- retina
TTTTGAGTGA
(
3
)
1.9
0.0019
P10.5 crx+ retina
CCTTACACTT
(
4
)
23.1
0.0231
P10.5 crx+ retina
TGGCACTGTA
(
3
)
3.8
0.0038
P10.5 crx+ retina
TTTTGAGTGA
(
3
)
1.9
0.0019
Adult retinal
CCTTACACTT
(
4
)
14.8
0.0148
Adult retinal
AAGATGAGGG
(
4
)
1.9
0.0019
Adult retinal
CACTACACTG
(
4
)
1.9
0.0019
Adult retinal
TGAACCTTGA
(
3
)
1.9
0.0019
Adult retinal
TGAGAACTGC
(
5
)
1.9
0.0019
ONL
CCTTACACTT
(
4
)
3.8
0.0038
ONL
GATGACTTTG
(
5
)
1.9
0.0019
