Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.213408	D16Ium21e	DNA segment, Chr 16, Indiana University Medical 21, expressed	16	16 67.4 cM	28186
Mm.213408	Ttc3	tetratricopeptide repeat domain 3	16	16 67.9 cM	22129
Mm.213408	2610202A04Rik	RIKEN cDNA 2610202A04 gene	16		70444
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 193 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCCTGCGC (14) 21.2 0.0212 P8 Cb GC CCTTACACTT (5) 16.3 0.0163 P8 Cb GC GGGAGACTCT (4) 9.8 0.0098 P8 Cb GC TCGGAGAAGA (4) 4.9 0.0049 P8 Cb GC TGAGAACTGC (5) 4.9 0.0049 P8 Cb GC CCTGTGCCAC (5) 3.3 0.0033 P8 Cb GC GTAACCTTAG (4) 3.3 0.0033 P8 Cb GC TGGCACTGTA (4) 3.3 0.0033 P8 Cb GC AAAGCTAAAG (4) 1.6 0.0016 P8 Cb GC AAGATGAGGG (6) 1.6 0.0016 P8 Cb GC AAGCAGTGGA (6) 1.6 0.0016 P8 Cb GC ACTTCCTGTG (5) 1.6 0.0016 P8 Cb GC CAATCTTGTA (3) 1.6 0.0016 P8 Cb GC CTGGAGTGAC (3) 1.6 0.0016 P8 Cb GC CTTAAAAAAA (12) 1.6 0.0016 P8 Cb GC GCTCTGAACA (5) 1.6 0.0016 P8 Cb GC TTTTGAGTGA (3) 1.6 0.0016 Cb medulloblastoma GGGAGACTCT (4) 18.5 0.0185 Cb medulloblastoma CCTTACACTT (5) 16.2 0.0162 Cb medulloblastoma TAAAAAGAAA (4) 13.9 0.0139 Cb medulloblastoma CTTAAAAAAA (12) 9.2 0.0092 Cb medulloblastoma TCGGAGAAGA (4) 9.2 0.0092 Cb medulloblastoma GCCCCTGCGC (14) 6.9 0.0069 Cb medulloblastoma AAAGCTAAAG (4) 2.3 0.0023 Cb medulloblastoma AGACTTCAAA (6) 2.3 0.0023 Cb medulloblastoma TGAACCTTGA (4) 2.3 0.0023 Cb medulloblastoma TGAGAACTGC (5) 2.3 0.0023 Cb medulloblastoma TGGCACTGTA (4) 2.3 0.0023 P8 GC+1d culture GCCCCTGCGC (14) 46.8 0.0468 P8 GC+1d culture CCTTACACTT (5) 26.3 0.0263 P8 GC+1d culture TGGCACTGTA (4) 10.3 0.0103 P8 GC+1d culture GTAACCTTAG (4) 5.7 0.0057 P8 GC+1d culture CTTAAAAAAA (12) 3.4 0.0034 P8 GC+1d culture GGGAGACTCT (4) 2.3 0.0023 P8 GC+1d culture TCGGAGAAGA (4) 2.3 0.0023 P8 GC+1d culture ACTTCCTGTG (5) 1.1 0.0011 P8 GC+1d culture AGACTTCAAA (6) 1.1 0.0011 P8 GC+1d culture GAGCTTGATT (4) 1.1 0.0011 P8 GC+1d culture TAAAAAGAAA (4) 1.1 0.0011 P8 GC+1d culture TTGAGAACTG (4) 1.1 0.0011 P8 GC+SHH+1d culture CCTTACACTT (5) 24.6 0.0246 P8 GC+SHH+1d culture GCCCCTGCGC (14) 21.1 0.0211 P8 GC+SHH+1d culture CTTAAAAAAA (12) 5.9 0.0059 P8 GC+SHH+1d culture TGGCACTGTA (4) 5.9 0.0059 P8 GC+SHH+1d culture AAGCAGTGGA (6) 2.3 0.0023 P8 GC+SHH+1d culture AGACTTCAAA (6) 2.3 0.0023 P8 GC+SHH+1d culture GAGCTTGATT (4) 2.3 0.0023 P8 GC+SHH+1d culture GGGAGACTCT (4) 1.2 0.0012 P8 GC+SHH+1d culture GTAACCTTAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TCGGAGAAGA (4) 1.2 0.0012 P8 GC+SHH+1d culture TGAACCTTGA (4) 1.2 0.0012 P8 GC+SHH+1d culture TTGAGAACTG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTTTGAGTGA (3) 1.2 0.0012 3T3 fibroblasts TCGGAGAAGA (4) 7 0.007 3T3 fibroblasts TGAGAACTGC (5) 3.5 0.0035 E15 cortex TCGGAGAAGA (4) 39.6 0.0396 E15 cortex TGAGAACTGC (5) 39.6 0.0396 E15 cortex CCTTACACTT (5) 14.8 0.0148 E15 cortex GGGAGACTCT (4) 9.9 0.0099 E15 cortex ACTTCCTGTG (5) 4.9 0.0049 E15 cortex CAATCTTGTA (3) 4.9 0.0049 E15 cortex TTTTGAGTGA (3) 4.9 0.0049 P1 cortex CCTTACACTT (5) 27.3 0.0273 P1 cortex TTTTGAGTGA (3) 18.2 0.0182 P1 cortex TCGGAGAAGA (4) 9.1 0.0091 P1 cortex TGGCACTGTA (4) 9.1 0.0091 P1 cortex AAGATGAGGG (6) 4.5 0.0045 P1 cortex CAATCTTGTA (3) 4.5 0.0045 P1 cortex GAAGCTCTCA (4) 4.5 0.0045 P1 cortex GCCCCTGCGC (14) 4.5 0.0045 P1 cortex TTGAGAACTG (4) 4.5 0.0045 Hypothalamus CCTTACACTT (5) 27.2 0.0272 Hypothalamus TAAAAAGAAA (4) 25.4 0.0254 Hypothalamus CTTAAAAAAA (12) 10.9 0.0109 Hypothalamus TGGCACTGTA (4) 10.9 0.0109 Hypothalamus GGGAGACTCT (4) 3.6 0.0036 Hypothalamus TTTTGAGTGA (3) 3.6 0.0036 Hypothalamus AAAGCTAAAG (4) 1.8 0.0018 Hypothalamus AGACTTCAAA (6) 1.8 0.0018 Hypothalamus GAAGCTCTCA (4) 1.8 0.0018 Hypothalamus GTAACCTTAG (4) 1.8 0.0018 Hypothalamus TTGAGAACTG (4) 1.8 0.0018 E12.5 retina CCTTACACTT (5) 13.1 0.0131 E12.5 retina GCCCCTGCGC (14) 7.5 0.0075 E12.5 retina GCTCTGAACA (5) 3.8 0.0038 E12.5 retina TCGGAGAAGA (4) 3.8 0.0038 E12.5 retina TTTTGAGTGA (3) 3.8 0.0038 E12.5 retina AAAGCTAAAG (4) 1.9 0.0019 E12.5 retina CTTAAAAAAA (12) 1.9 0.0019 E12.5 retina GTAACCTTAG (4) 1.9 0.0019 E12.5 retina TGGCACTGTA (4) 1.9 0.0019 E14.5 retina CCTTACACTT (5) 21.9 0.0219 E14.5 retina CTTAAAAAAA (12) 10.9 0.0109 E14.5 retina TCGGAGAAGA (4) 3.6 0.0036 E14.5 retina CCTGTGCCAC (5) 1.8 0.0018 E14.5 retina GATGACTTTG (11) 1.8 0.0018 E14.5 retina GCCCCTGCGC (14) 1.8 0.0018 E14.5 retina GGGAGACTCT (4) 1.8 0.0018 E14.5 retina TGGCACTGTA (4) 1.8 0.0018 E16.5 retina CCTTACACTT (5) 19.9 0.0199 E16.5 retina AAGATGAGGG (6) 5.4 0.0054 E16.5 retina TGGCACTGTA (4) 5.4 0.0054 E16.5 retina AAAGCTAAAG (4) 3.6 0.0036 E16.5 retina TCGGAGAAGA (4) 3.6 0.0036 E16.5 retina CTTAAAAAAA (12) 1.8 0.0018 E16.5 retina GCCCCTGCGC (14) 1.8 0.0018 E16.5 retina GTAACCTTAG (4) 1.8 0.0018 E16.5 retina TAAAAAGAAA (4) 1.8 0.0018 E16.5 retina TTTTGAGTGA (3) 1.8 0.0018 E18.5 retina CCTTACACTT (5) 18.2 0.0182 E18.5 retina CTTAAAAAAA (12) 7.3 0.0073 E18.5 retina GCCCCTGCGC (14) 7.3 0.0073 E18.5 retina GAAGCTCTCA (4) 1.8 0.0018 E18.5 retina GGGAGACTCT (4) 1.8 0.0018 E18.5 retina GTAACCTTAG (4) 1.8 0.0018 E18.5 retina TCGGAGAAGA (4) 1.8 0.0018 E18.5 retina TGGCACTGTA (4) 1.8 0.0018 P0.5 retina CCTTACACTT (5) 21.6 0.0216 P0.5 retina GCCCCTGCGC (14) 5.9 0.0059 P0.5 retina GTAACCTTAG (4) 5.9 0.0059 P0.5 retina TCGGAGAAGA (4) 3.9 0.0039 P0.5 retina CTTAAAAAAA (12) 2 0.002 P0.5 retina GATGACTTTG (11) 2 0.002 P0.5 retina TAAAAAGAAA (4) 2 0.002 P0.5 retina TGAGAACTGC (5) 2 0.002 P0.5 retina TGGCACTGTA (4) 2 0.002 P2.5 retina CCTTACACTT (5) 31.7 0.0317 P2.5 retina CTTAAAAAAA (12) 14.1 0.0141 P2.5 retina GTAACCTTAG (4) 5.3 0.0053 P2.5 retina TCGGAGAAGA (4) 5.3 0.0053 P2.5 retina TGGCACTGTA (4) 3.5 0.0035 P2.5 retina AAAGCTAAAG (4) 1.8 0.0018 P2.5 retina AAGATGAGGG (6) 1.8 0.0018 P2.5 retina CACTACACTG (4) 1.8 0.0018 P2.5 retina GCCCCTGCGC (14) 1.8 0.0018 P2.5 retina GGGAGACTCT (4) 1.8 0.0018 P2.5 retina TGAACCTTGA (4) 1.8 0.0018 P2.5 retina TGAGAACTGC (5) 1.8 0.0018 P2.5 retina TTGAGAACTG (4) 1.8 0.0018 P4.5 retina CCTTACACTT (5) 19.8 0.0198 P4.5 retina TCGGAGAAGA (4) 7.9 0.0079 P4.5 retina GCCCCTGCGC (14) 5.9 0.0059 P4.5 retina CTTAAAAAAA (12) 2 0.002 P4.5 retina GATGAGTTTG (3) 2 0.002 P4.5 retina GTAACCTTAG (4) 2 0.002 P4.5 retina TAAAAAGAAA (4) 2 0.002 P4.5 retina TGAGAACTGC (5) 2 0.002 P6.5 retina CCTTACACTT (5) 33.3 0.0333 P6.5 retina TAAAAAGAAA (4) 5 0.005 P6.5 retina TCGGAGAAGA (4) 5 0.005 P6.5 retina TTTTGAGTGA (3) 5 0.005 P6.5 retina CTTAAAAAAA (12) 3.3 0.0033 P6.5 retina GGGAGACTCT (4) 3.3 0.0033 P6.5 retina CACTACACTG (4) 1.7 0.0017 P6.5 retina CTGGAGTGAC (3) 1.7 0.0017 P6.5 retina GATGACTTTG (11) 1.7 0.0017 P6.5 retina GTAACCTTAG (4) 1.7 0.0017 P6.5 retina TGAGAACTGC (5) 1.7 0.0017 P10.5 crx- retina CCTTACACTT (5) 20.4 0.0204 P10.5 crx- retina TCGGAGAAGA (4) 9.3 0.0093 P10.5 crx- retina TAAAAAGAAA (4) 3.7 0.0037 P10.5 crx- retina AGACTTCAAA (6) 1.9 0.0019 P10.5 crx- retina CTTAAAAAAA (12) 1.9 0.0019 P10.5 crx- retina GCCCCTGCGC (14) 1.9 0.0019 P10.5 crx- retina TGAACCTTGA (4) 1.9 0.0019 P10.5 crx- retina TTTTGAGTGA (3) 1.9 0.0019 P10.5 crx+ retina CCTTACACTT (5) 23.1 0.0231 P10.5 crx+ retina CTTAAAAAAA (12) 5.8 0.0058 P10.5 crx+ retina GTAACCTTAG (4) 5.8 0.0058 P10.5 crx+ retina TCGGAGAAGA (4) 5.8 0.0058 P10.5 crx+ retina GCCCCTGCGC (14) 3.8 0.0038 P10.5 crx+ retina TGGCACTGTA (4) 3.8 0.0038 P10.5 crx+ retina GGGAGACTCT (4) 1.9 0.0019 P10.5 crx+ retina TTGAGAACTG (4) 1.9 0.0019 P10.5 crx+ retina TTTTGAGTGA (3) 1.9 0.0019 Adult retinal CCTTACACTT (5) 14.8 0.0148 Adult retinal GCCCCTGCGC (14) 11.1 0.0111 Adult retinal GGGAGACTCT (4) 7.4 0.0074 Adult retinal AAGATGAGGG (6) 1.9 0.0019 Adult retinal CACTACACTG (4) 1.9 0.0019 Adult retinal CTGGAGTGAC (3) 1.9 0.0019 Adult retinal CTTAAAAAAA (12) 1.9 0.0019 Adult retinal GAGCTTGATT (4) 1.9 0.0019 Adult retinal TAAAAAGAAA (4) 1.9 0.0019 Adult retinal TGAACCTTGA (4) 1.9 0.0019 Adult retinal TGAGAACTGC (5) 1.9 0.0019 Adult retinal TTGAGAACTG (4) 1.9 0.0019 ONL GCCCCTGCGC (14) 5.7 0.0057 ONL CCTTACACTT (5) 3.8 0.0038 ONL TAAAAAGAAA (4) 3.8 0.0038 ONL ACTTCCTGTG (5) 1.9 0.0019 ONL GATGACTTTG (11) 1.9 0.0019 ONL GTAACCTTAG (4) 1.9 0.0019