Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.218571	Colec12	collectin sub-family member 12	18		140792
Gene Ontology	immune response | integral to membrane | integral to membrane | phagocytosis, binding | receptor activity | scavenger receptor activity | sugar binding
Human Homolog	COLEC12[collectin sub-family member 12]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 87 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGTTTGTGC (18) 3.3 0.0033 P8 Cb GC GAAAAATATT (7) 1.6 0.0016 P8 Cb GC GAGGCATTTC (13) 1.6 0.0016 Cb medulloblastoma GAGTTTCTCT (2) 6.9 0.0069 Cb medulloblastoma ATGAGGTCAA (3) 2.3 0.0023 Cb medulloblastoma GAGGCATTTC (13) 2.3 0.0023 Cb medulloblastoma GAGGGATGTT (14) 2.3 0.0023 P8 GC+1d culture GAGGCATTTC (13) 4.6 0.0046 P8 GC+1d culture GAAAAATATT (7) 3.4 0.0034 P8 GC+1d culture GACACATCTC (3) 3.4 0.0034 P8 GC+1d culture ATGAGGTCAA (3) 1.1 0.0011 P8 GC+1d culture ATGTTTGTGC (18) 1.1 0.0011 P8 GC+1d culture GAGTTTCTCT (2) 1.1 0.0011 P8 GC+SHH+1d culture GAGTTTCTCT (2) 3.5 0.0035 P8 GC+SHH+1d culture GAAAAATATT (7) 2.3 0.0023 P8 GC+SHH+1d culture GAGGCATTTC (13) 2.3 0.0023 P8 GC+SHH+1d culture ATGTTTGTGC (18) 1.2 0.0012 P8 GC+SHH+1d culture GAGGGATGTT (14) 1.2 0.0012 P8 GC+SHH+1d culture GGATAAAAAC 1.2 0.0012 3T3 fibroblasts GAGTTTCTCT (2) 7 0.007 3T3 fibroblasts ATGTTTGTGC (18) 3.5 0.0035 3T3 fibroblasts GAGGGATGTT (14) 3.5 0.0035 E15 cortex GAGGCATTTC (13) 24.7 0.0247 E15 cortex ATGTTTGTGC (18) 4.9 0.0049 E15 cortex GAGGGATGTT (14) 4.9 0.0049 P1 cortex GAAAAATATT (7) 9.1 0.0091 P1 cortex ATGTTTGTGC (18) 4.5 0.0045 Hypothalamus GAAAAATATT (7) 10.9 0.0109 Hypothalamus GACACATCTC (3) 9.1 0.0091 Hypothalamus ATGTTTGTGC (18) 1.8 0.0018 Hypothalamus GAGGCATTTC (13) 1.8 0.0018 Hypothalamus GAGTTTCTCT (2) 1.8 0.0018 E12.5 retina GAGGGATGTT (14) 3.8 0.0038 E12.5 retina GAAAAATATT (7) 1.9 0.0019 E12.5 retina GACACATCTC (3) 1.9 0.0019 E12.5 retina GAGGCATTTC (13) 1.9 0.0019 E12.5 retina GAGTTTCTCT (2) 1.9 0.0019 E14.5 retina ATGTTTGTGC (18) 27.3 0.0273 E14.5 retina GAGGGATGTT (14) 23.7 0.0237 E14.5 retina GAGGCATTTC (13) 10.9 0.0109 E14.5 retina GAAAAATATT (7) 5.5 0.0055 E16.5 retina ATGTTTGTGC (18) 7.2 0.0072 E16.5 retina GAGGCATTTC (13) 7.2 0.0072 E16.5 retina GAGGGATGTT (14) 5.4 0.0054 E16.5 retina GAAAAATATT (7) 1.8 0.0018 E16.5 retina GAGTTTCTCT (2) 1.8 0.0018 E18.5 retina GAAAAATATT (7) 10.9 0.0109 E18.5 retina GAGGGATGTT (14) 3.6 0.0036 E18.5 retina GAGGCATTTC (13) 1.8 0.0018 P0.5 retina GAGGCATTTC (13) 5.9 0.0059 P0.5 retina ATGTTTGTGC (18) 2 0.002 P0.5 retina GAAAAATATT (7) 2 0.002 P0.5 retina GAGGGATGTT (14) 2 0.002 P2.5 retina GACACATCTC (3) 7 0.007 P2.5 retina GAGGCATTTC (13) 5.3 0.0053 P2.5 retina ATGTTTGTGC (18) 3.5 0.0035 P2.5 retina GAAAAATATT (7) 3.5 0.0035 P2.5 retina GAGGGATGTT (14) 1.8 0.0018 P4.5 retina GAAAAATATT (7) 9.9 0.0099 P4.5 retina GACACATCTC (3) 5.9 0.0059 P4.5 retina GAGGGATGTT (14) 5.9 0.0059 P4.5 retina GGATAAAAAC 2 0.002 P6.5 retina GAGGCATTTC (13) 5 0.005 P6.5 retina ATGTTTGTGC (18) 3.3 0.0033 P6.5 retina GAAAAATATT (7) 1.7 0.0017 P6.5 retina GACACATCTC (3) 1.7 0.0017 P6.5 retina GAGGGATGTT (14) 1.7 0.0017 P10.5 crx- retina GAAAAATATT (7) 7.4 0.0074 P10.5 crx- retina GAGGCATTTC (13) 7.4 0.0074 P10.5 crx- retina ATGTTTGTGC (18) 1.9 0.0019 P10.5 crx- retina GAGGGATGTT (14) 1.9 0.0019 P10.5 crx+ retina GAGGCATTTC (13) 9.6 0.0096 P10.5 crx+ retina ATGTTTGTGC (18) 3.8 0.0038 P10.5 crx+ retina GAAAAATATT (7) 3.8 0.0038 P10.5 crx+ retina GACACATCTC (3) 3.8 0.0038 P10.5 crx+ retina GAGGGATGTT (14) 3.8 0.0038 Adult retinal GAGGCATTTC (13) 5.6 0.0056 Adult retinal GACACATCTC (3) 3.7 0.0037 Adult retinal ATGAGGTCAA (3) 1.9 0.0019 Adult retinal ATGTTTGTGC (18) 1.9 0.0019 Adult retinal GAGGGATGTT (14) 1.9 0.0019 ONL GAAAAATATT (7) 11.5 0.0115 ONL ATGTTTGTGC (18) 7.7 0.0077 ONL GAGGGATGTT (14) 5.7 0.0057 ONL GAGGCATTTC (13) 3.8 0.0038 ONL GACACATCTC (3) 1.9 0.0019 ONL GGATAAAAAC 1.9 0.0019