Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.219245
Scoc
short coiled-coil protein
8
56367
Human Homolog
SCOC[short coiled-coil protein]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 122 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GCTCTCCAGC
(
7
)
57.1
0.0571
P8 Cb GC
CATTTGAAAA
(
5
)
8.2
0.0082
P8 Cb GC
GGATGGCTTA
(
3
)
3.3
0.0033
P8 Cb GC
CGCAGGGGCG
1.6
0.0016
P8 Cb GC
GGACTTCTTT (
2
)
1.6
0.0016
P8 Cb GC
GTGGAAAAAA (
7
)
1.6
0.0016
Cb medulloblastoma
GCTCTCCAGC
(
7
)
161.9
0.1619
Cb medulloblastoma
CATTTGAAAA
(
5
)
6.9
0.0069
Cb medulloblastoma
AATATAAGAG
(
3
)
2.3
0.0023
Cb medulloblastoma
GATGGCTTAT
2.3
0.0023
Cb medulloblastoma
GGATGGCTTA
(
3
)
2.3
0.0023
Cb medulloblastoma
TAGAGACTTT
2.3
0.0023
P8 GC+1d culture
GCTCTCCAGC
(
7
)
69.6
0.0696
P8 GC+1d culture
CATTTGAAAA
(
5
)
5.7
0.0057
P8 GC+1d culture
GTGGAAAAAA (
7
)
2.3
0.0023
P8 GC+1d culture
CCCATTATTC
(
4
)
1.1
0.0011
P8 GC+1d culture
GCCTCTTTTC
1.1
0.0011
P8 GC+1d culture
TACTGAATGC
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
GCTCTCCAGC
(
7
)
74.9
0.0749
P8 GC+SHH+1d culture
CATTTGAAAA
(
5
)
7
0.007
P8 GC+SHH+1d culture
AATATAAGAG
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
CCCATTATTC
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
CGCAGGGGCG
1.2
0.0012
P8 GC+SHH+1d culture
GGATGGCTTA
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGGCCTCCC (
7
)
1.2
0.0012
P8 GC+SHH+1d culture
TGGATGGAGA
1.2
0.0012
3T3 fibroblasts
GCTCTCCAGC
(
7
)
28
0.028
3T3 fibroblasts
GCCTCTTTTC
3.5
0.0035
3T3 fibroblasts
GGACTTCTTT (
2
)
3.5
0.0035
E15 cortex
GCTCTCCAGC
(
7
)
69.3
0.0693
E15 cortex
GGATGGCTTA
(
3
)
19.8
0.0198
P1 cortex
GCTCTCCAGC
(
7
)
54.5
0.0545
P1 cortex
AATATAAGAG
(
3
)
13.6
0.0136
P1 cortex
GTGGAAAAAA (
7
)
4.5
0.0045
Hypothalamus
GCTCTCCAGC
(
7
)
77.9
0.0779
Hypothalamus
CATTTGAAAA
(
5
)
12.7
0.0127
Hypothalamus
GATGGCTTAT
3.6
0.0036
Hypothalamus
GCTCTTCGGG
3.6
0.0036
Hypothalamus
GTGGAAAAAA (
7
)
3.6
0.0036
Hypothalamus
AATATAAGAG
(
3
)
1.8
0.0018
Hypothalamus
CGCAGGGGCG
1.8
0.0018
Hypothalamus
TAGAGACTTT
1.8
0.0018
E12.5 retina
GCTCTCCAGC
(
7
)
50.7
0.0507
E12.5 retina
CATTTGAAAA
(
5
)
28.2
0.0282
E12.5 retina
GGATGGCTTA
(
3
)
3.8
0.0038
E14.5 retina
GCTCTCCAGC
(
7
)
72.9
0.0729
E14.5 retina
CATTTGAAAA
(
5
)
14.6
0.0146
E14.5 retina
CGCAGGGGCG
3.6
0.0036
E14.5 retina
GTGGAAAAAA (
7
)
3.6
0.0036
E14.5 retina
TGGATGGAGA
3.6
0.0036
E14.5 retina
GGATGGCTTA
(
3
)
1.8
0.0018
E14.5 retina
TGCACTCGTT
(
2
)
1.8
0.0018
E16.5 retina
GCTCTCCAGC
(
7
)
97.8
0.0978
E16.5 retina
CATTTGAAAA
(
5
)
16.3
0.0163
E16.5 retina
AATATAAGAG
(
3
)
5.4
0.0054
E16.5 retina
CGCAGGGGCG
3.6
0.0036
E16.5 retina
GTGGAAAAAA (
7
)
3.6
0.0036
E16.5 retina
CCCATTATTC
(
4
)
1.8
0.0018
E16.5 retina
GCTCTTCGGG
1.8
0.0018
E16.5 retina
TACTGAATGC
(
2
)
1.8
0.0018
E16.5 retina
TGGATGGAGA
1.8
0.0018
E18.5 retina
GCTCTCCAGC
(
7
)
125.5
0.1255
E18.5 retina
CATTTGAAAA
(
5
)
14.6
0.0146
E18.5 retina
AATATAAGAG
(
3
)
3.6
0.0036
E18.5 retina
GTGGAAAAAA (
7
)
1.8
0.0018
P0.5 retina
GCTCTCCAGC
(
7
)
66.7
0.0667
P0.5 retina
CATTTGAAAA
(
5
)
11.8
0.0118
P0.5 retina
AATATAAGAG
(
3
)
3.9
0.0039
P0.5 retina
CCCATTATTC
(
4
)
2
0.002
P0.5 retina
GCCTCTTTTC
2
0.002
P0.5 retina
GTGGAAAAAA (
7
)
2
0.002
P0.5 retina
TAGAGACTTT
2
0.002
P0.5 retina
TGCACTCGTT
(
2
)
2
0.002
P2.5 retina
GCTCTCCAGC
(
7
)
75.7
0.0757
P2.5 retina
CATTTGAAAA
(
5
)
10.6
0.0106
P2.5 retina
AATATAAGAG
(
3
)
8.8
0.0088
P2.5 retina
GCTCTGCATC
(
3
)
1.8
0.0018
P2.5 retina
GCTTTCCAGC
(
3
)
1.8
0.0018
P2.5 retina
TCTGCTTCTA
(
2
)
1.8
0.0018
P2.5 retina
TGCACTCGTT
(
2
)
1.8
0.0018
P2.5 retina
TGGATGGAGA
1.8
0.0018
P4.5 retina
GCTCTCCAGC
(
7
)
65.4
0.0654
P4.5 retina
CATTTGAAAA
(
5
)
7.9
0.0079
P4.5 retina
AATATAAGAG
(
3
)
5.9
0.0059
P4.5 retina
GTGGAAAAAA (
7
)
5.9
0.0059
P4.5 retina
GGATGGCTTA
(
3
)
4
0.004
P4.5 retina
CGCAGGGGCG
2
0.002
P6.5 retina
GCTCTCCAGC
(
7
)
81.7
0.0817
P6.5 retina
CATTTGAAAA
(
5
)
13.3
0.0133
P6.5 retina
GTGGAAAAAA (
7
)
8.3
0.0083
P6.5 retina
AATATAAGAG
(
3
)
3.3
0.0033
P6.5 retina
TGGATGGAGA
3.3
0.0033
P6.5 retina
CGCAGGGGCG
1.7
0.0017
P6.5 retina
GCTCTGCATC
(
3
)
1.7
0.0017
P10.5 crx- retina
GCTCTCCAGC
(
7
)
55.7
0.0557
P10.5 crx- retina
AATATAAGAG
(
3
)
13
0.013
P10.5 crx- retina
CATTTGAAAA
(
5
)
13
0.013
P10.5 crx- retina
CCCATTATTC
(
4
)
1.9
0.0019
P10.5 crx- retina
CGCAGGGGCG
1.9
0.0019
P10.5 crx- retina
GCTCTGCATC
(
3
)
1.9
0.0019
P10.5 crx- retina
TACTGAATGC
(
2
)
1.9
0.0019
P10.5 crx+ retina
GCTCTCCAGC
(
7
)
94.2
0.0942
P10.5 crx+ retina
TCTGCTTCTA
(
2
)
3.8
0.0038
P10.5 crx+ retina
TGCACTCGTT
(
2
)
3.8
0.0038
P10.5 crx+ retina
GCTCTGCATC
(
3
)
1.9
0.0019
P10.5 crx+ retina
GGGGCCTCCC (
7
)
1.9
0.0019
P10.5 crx+ retina
GTGGAAAAAA (
7
)
1.9
0.0019
P10.5 crx+ retina
TAGAGACTTT
1.9
0.0019
P10.5 crx+ retina
TGGATGGAGA
1.9
0.0019
Adult retinal
GCTCTCCAGC
(
7
)
57.4
0.0574
Adult retinal
CATTTGAAAA
(
5
)
7.4
0.0074
Adult retinal
TCTGCTTCTA
(
2
)
5.6
0.0056
Adult retinal
GCTCTTCGGG
1.9
0.0019
Adult retinal
GGACTTCTTT (
2
)
1.9
0.0019
Adult retinal
GGGGCCTCCC (
7
)
1.9
0.0019
Adult retinal
GTGGAAAAAA (
7
)
1.9
0.0019
Adult retinal
TGCACTCGTT
(
2
)
1.9
0.0019
ONL
GCTCTCCAGC
(
7
)
28.7
0.0287
ONL
CATTTGAAAA
(
5
)
5.7
0.0057
ONL
AATATAAGAG
(
3
)
3.8
0.0038
ONL
GCTTTCCAGC
(
3
)
1.9
0.0019
ONL
GGGGCCTCCC (
7
)
1.9
0.0019
