Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.219245	Scoc	short coiled-coil protein	8		56367
Human Homolog	SCOC[short coiled-coil protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 100 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTCTCCAGC (2) 57.1 0.0571 P8 Cb GC CATTTGAAAA (2) 8.2 0.0082 P8 Cb GC GGATGGCTTA (3) 3.3 0.0033 P8 Cb GC CGCAGGGGCG 1.6 0.0016 Cb medulloblastoma GCTCTCCAGC (2) 161.9 0.1619 Cb medulloblastoma CATTTGAAAA (2) 6.9 0.0069 Cb medulloblastoma AATATAAGAG 2.3 0.0023 Cb medulloblastoma GATGGCTTAT 2.3 0.0023 Cb medulloblastoma GGATGGCTTA (3) 2.3 0.0023 Cb medulloblastoma TAGAGACTTT 2.3 0.0023 P8 GC+1d culture GCTCTCCAGC (2) 69.6 0.0696 P8 GC+1d culture CATTTGAAAA (2) 5.7 0.0057 P8 GC+1d culture CCCATTATTC 1.1 0.0011 P8 GC+1d culture TACTGAATGC 1.1 0.0011 P8 GC+SHH+1d culture GCTCTCCAGC (2) 74.9 0.0749 P8 GC+SHH+1d culture CATTTGAAAA (2) 7 0.007 P8 GC+SHH+1d culture AATATAAGAG 2.3 0.0023 P8 GC+SHH+1d culture CCCATTATTC 1.2 0.0012 P8 GC+SHH+1d culture CGCAGGGGCG 1.2 0.0012 P8 GC+SHH+1d culture GGATGGCTTA (3) 1.2 0.0012 P8 GC+SHH+1d culture TGGATGGAGA 1.2 0.0012 3T3 fibroblasts GCTCTCCAGC (2) 28 0.028 E15 cortex GCTCTCCAGC (2) 69.3 0.0693 E15 cortex GGATGGCTTA (3) 19.8 0.0198 P1 cortex GCTCTCCAGC (2) 54.5 0.0545 P1 cortex AATATAAGAG 13.6 0.0136 Hypothalamus GCTCTCCAGC (2) 77.9 0.0779 Hypothalamus CATTTGAAAA (2) 12.7 0.0127 Hypothalamus GATGGCTTAT 3.6 0.0036 Hypothalamus GCTCTTCGGG 3.6 0.0036 Hypothalamus AATATAAGAG 1.8 0.0018 Hypothalamus CGCAGGGGCG 1.8 0.0018 Hypothalamus TAGAGACTTT 1.8 0.0018 E12.5 retina GCTCTCCAGC (2) 50.7 0.0507 E12.5 retina CATTTGAAAA (2) 28.2 0.0282 E12.5 retina GGATGGCTTA (3) 3.8 0.0038 E14.5 retina GCTCTCCAGC (2) 72.9 0.0729 E14.5 retina CATTTGAAAA (2) 14.6 0.0146 E14.5 retina CGCAGGGGCG 3.6 0.0036 E14.5 retina TGGATGGAGA 3.6 0.0036 E14.5 retina GGATGGCTTA (3) 1.8 0.0018 E14.5 retina TGCACTCGTT 1.8 0.0018 E16.5 retina GCTCTCCAGC (2) 97.8 0.0978 E16.5 retina CATTTGAAAA (2) 16.3 0.0163 E16.5 retina AATATAAGAG 5.4 0.0054 E16.5 retina CGCAGGGGCG 3.6 0.0036 E16.5 retina CCCATTATTC 1.8 0.0018 E16.5 retina GCTCTTCGGG 1.8 0.0018 E16.5 retina TACTGAATGC 1.8 0.0018 E16.5 retina TGGATGGAGA 1.8 0.0018 E18.5 retina GCTCTCCAGC (2) 125.5 0.1255 E18.5 retina CATTTGAAAA (2) 14.6 0.0146 E18.5 retina AATATAAGAG 3.6 0.0036 P0.5 retina GCTCTCCAGC (2) 66.7 0.0667 P0.5 retina CATTTGAAAA (2) 11.8 0.0118 P0.5 retina AATATAAGAG 3.9 0.0039 P0.5 retina CCCATTATTC 2 0.002 P0.5 retina TAGAGACTTT 2 0.002 P0.5 retina TGCACTCGTT 2 0.002 P2.5 retina GCTCTCCAGC (2) 75.7 0.0757 P2.5 retina CATTTGAAAA (2) 10.6 0.0106 P2.5 retina AATATAAGAG 8.8 0.0088 P2.5 retina GCTCTGCATC 1.8 0.0018 P2.5 retina GCTTTCCAGC 1.8 0.0018 P2.5 retina TCTGCTTCTA 1.8 0.0018 P2.5 retina TGCACTCGTT 1.8 0.0018 P2.5 retina TGGATGGAGA 1.8 0.0018 P4.5 retina GCTCTCCAGC (2) 65.4 0.0654 P4.5 retina CATTTGAAAA (2) 7.9 0.0079 P4.5 retina AATATAAGAG 5.9 0.0059 P4.5 retina GGATGGCTTA (3) 4 0.004 P4.5 retina CGCAGGGGCG 2 0.002 P6.5 retina GCTCTCCAGC (2) 81.7 0.0817 P6.5 retina CATTTGAAAA (2) 13.3 0.0133 P6.5 retina AATATAAGAG 3.3 0.0033 P6.5 retina TGGATGGAGA 3.3 0.0033 P6.5 retina CGCAGGGGCG 1.7 0.0017 P6.5 retina GCTCTGCATC 1.7 0.0017 P10.5 crx- retina GCTCTCCAGC (2) 55.7 0.0557 P10.5 crx- retina AATATAAGAG 13 0.013 P10.5 crx- retina CATTTGAAAA (2) 13 0.013 P10.5 crx- retina CCCATTATTC 1.9 0.0019 P10.5 crx- retina CGCAGGGGCG 1.9 0.0019 P10.5 crx- retina GCTCTGCATC 1.9 0.0019 P10.5 crx- retina TACTGAATGC 1.9 0.0019 P10.5 crx+ retina GCTCTCCAGC (2) 94.2 0.0942 P10.5 crx+ retina TCTGCTTCTA 3.8 0.0038 P10.5 crx+ retina TGCACTCGTT 3.8 0.0038 P10.5 crx+ retina GCTCTGCATC 1.9 0.0019 P10.5 crx+ retina TAGAGACTTT 1.9 0.0019 P10.5 crx+ retina TGGATGGAGA 1.9 0.0019 Adult retinal GCTCTCCAGC (2) 57.4 0.0574 Adult retinal CATTTGAAAA (2) 7.4 0.0074 Adult retinal TCTGCTTCTA 5.6 0.0056 Adult retinal GCTCTTCGGG 1.9 0.0019 Adult retinal TGCACTCGTT 1.9 0.0019 ONL GCTCTCCAGC (2) 28.7 0.0287 ONL CATTTGAAAA (2) 5.7 0.0057 ONL AATATAAGAG 3.8 0.0038 ONL GCTTTCCAGC 1.9 0.0019