Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.220038	Ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	11	11 63.0 cM	13207
Gene Ontology	ATP binding | ATP dependent helicase activity | helicase activity | hydrolase activity | intracellular | nucleic acid binding | nucleus | RNA binding | RNA helicase activity
Human Homolog	DDX5[DEAD (Asp-Glu-Ala-Asp) box polypeptide 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 323 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTTCCAAT (3) 223.5 0.2235 P8 Cb GC TGTGTTGTGT (4) 50.6 0.0506 P8 Cb GC CATTGCCTTC (3) 17.9 0.0179 P8 Cb GC GTCAATTAAC (2) 4.9 0.0049 P8 Cb GC TACAACTTGG (4) 4.9 0.0049 P8 Cb GC ATTTTTTTTC (20) 3.3 0.0033 P8 Cb GC GCCTCCCAAT (4) 3.3 0.0033 P8 Cb GC GGAAATGCAG (7) 3.3 0.0033 P8 Cb GC TAGTTTTTTA (2) 3.3 0.0033 P8 Cb GC CCACTGAAAA (6) 1.6 0.0016 P8 Cb GC CTAAAAAGTG 1.6 0.0016 P8 Cb GC GATGTTCAAA (3) 1.6 0.0016 P8 Cb GC GTACAACTTG (4) 1.6 0.0016 P8 Cb GC TACACATAAA 1.6 0.0016 P8 Cb GC TGGATTTCTT (3) 1.6 0.0016 P8 Cb GC TGTGTAGTGT (4) 1.6 0.0016 P8 Cb GC TTGATTCTCT (3) 1.6 0.0016 Cb medulloblastoma GCCTTCCAAT (3) 115.6 0.1156 Cb medulloblastoma TGTGTTGTGT (4) 69.4 0.0694 Cb medulloblastoma ATTTTTTTTC (20) 9.2 0.0092 Cb medulloblastoma TGGATTTCTT (3) 9.2 0.0092 Cb medulloblastoma TGTGTAGTGT (4) 9.2 0.0092 Cb medulloblastoma GGGGGGGGGG (112) 6.9 0.0069 Cb medulloblastoma ATGTGATTGC (4) 2.3 0.0023 Cb medulloblastoma CATTGCCTTC (3) 2.3 0.0023 Cb medulloblastoma GATGTTCAAA (3) 2.3 0.0023 Cb medulloblastoma GTCAATTAAC (2) 2.3 0.0023 Cb medulloblastoma TACAACTTGG (4) 2.3 0.0023 Cb medulloblastoma TAGTTTTTTA (2) 2.3 0.0023 Cb medulloblastoma TGCAAATTTT (2) 2.3 0.0023 P8 GC+1d culture GCCTTCCAAT (3) 114.2 0.1142 P8 GC+1d culture TGTGTTGTGT (4) 45.7 0.0457 P8 GC+1d culture CATTGCCTTC (3) 8 0.008 P8 GC+1d culture TGCAAATTTT (2) 6.8 0.0068 P8 GC+1d culture TGGATTTCTT (3) 5.7 0.0057 P8 GC+1d culture AGCAGAGAAA (9) 4.6 0.0046 P8 GC+1d culture TGTGTAGTGT (4) 4.6 0.0046 P8 GC+1d culture ATTTTTTTTC (20) 3.4 0.0034 P8 GC+1d culture CCATTGAAAA 2.3 0.0023 P8 GC+1d culture CCTCCTCTAC 2.3 0.0023 P8 GC+1d culture GGAAATGCAG (7) 2.3 0.0023 P8 GC+1d culture GGATAGCCAA (3) 2.3 0.0023 P8 GC+1d culture GGGGGGGGGG (112) 2.3 0.0023 P8 GC+1d culture TCAGAGACCT (6) 2.3 0.0023 P8 GC+1d culture ATTTTTAAGT (3) 1.1 0.0011 P8 GC+1d culture CAGTGTGTTC (4) 1.1 0.0011 P8 GC+1d culture CTAAAAAGTG 1.1 0.0011 P8 GC+1d culture TACAACTTGG (4) 1.1 0.0011 P8 GC+1d culture TGCACGCAAG 1.1 0.0011 P8 GC+SHH+1d culture GCCTTCCAAT (3) 144 0.144 P8 GC+SHH+1d culture TGTGTTGTGT (4) 60.9 0.0609 P8 GC+SHH+1d culture GGAAATGCAG (7) 9.4 0.0094 P8 GC+SHH+1d culture CATTGCCTTC (3) 8.2 0.0082 P8 GC+SHH+1d culture TACAACTTGG (4) 8.2 0.0082 P8 GC+SHH+1d culture TGCAAATTTT (2) 8.2 0.0082 P8 GC+SHH+1d culture GGGGGGGGGG (112) 7 0.007 P8 GC+SHH+1d culture TAGTTTTTTA (2) 5.9 0.0059 P8 GC+SHH+1d culture ATTTTTTTTC (20) 4.7 0.0047 P8 GC+SHH+1d culture GGATAGCCAA (3) 3.5 0.0035 P8 GC+SHH+1d culture CAGTGTGTTC (4) 2.3 0.0023 P8 GC+SHH+1d culture TCAGAGACCT (6) 2.3 0.0023 P8 GC+SHH+1d culture TGGATTTCTT (3) 2.3 0.0023 P8 GC+SHH+1d culture TGTGTAGTGT (4) 2.3 0.0023 P8 GC+SHH+1d culture ACTAGTGCTT (80) 1.2 0.0012 P8 GC+SHH+1d culture AGCAGAGAAA (9) 1.2 0.0012 P8 GC+SHH+1d culture AGTGAGAAGG (2) 1.2 0.0012 P8 GC+SHH+1d culture CTAAAAAGTG 1.2 0.0012 P8 GC+SHH+1d culture GCCCTCCAAT 1.2 0.0012 P8 GC+SHH+1d culture GCCTCCCAAT (4) 1.2 0.0012 P8 GC+SHH+1d culture TAGTTTTTTT (4) 1.2 0.0012 P8 GC+SHH+1d culture TGCACGCAAG 1.2 0.0012 P8 GC+SHH+1d culture TTGATTTCTT (3) 1.2 0.0012 3T3 fibroblasts TGTGTTGTGT (4) 28 0.028 3T3 fibroblasts GCCTTCCAAT (3) 21 0.021 3T3 fibroblasts CCTCCTCTAC 10.5 0.0105 3T3 fibroblasts GATGTTCAAA (3) 7 0.007 3T3 fibroblasts AGTGAGAAGG (2) 3.5 0.0035 3T3 fibroblasts GGGGGGGGGG (112) 3.5 0.0035 3T3 fibroblasts GTCAATTAAC (2) 3.5 0.0035 E15 cortex GCCTTCCAAT (3) 59.4 0.0594 E15 cortex TGTGTTGTGT (4) 29.7 0.0297 E15 cortex GGAAATGCAG (7) 19.8 0.0198 E15 cortex TCCAGACCTG (5) 19.8 0.0198 E15 cortex ATTTTTTTTC (20) 4.9 0.0049 E15 cortex CATTGCCTTC (3) 4.9 0.0049 E15 cortex CCAACAGGGT (4) 4.9 0.0049 E15 cortex GGATAGCCAA (3) 4.9 0.0049 E15 cortex GGGGGGGGGG (112) 4.9 0.0049 E15 cortex GTCAATTAAC (2) 4.9 0.0049 E15 cortex TGGATTTCTT (3) 4.9 0.0049 P1 cortex TGTGTTGTGT (4) 54.5 0.0545 P1 cortex ATTTTTTTTC (20) 40.9 0.0409 P1 cortex GCCTTCCAAT (3) 27.3 0.0273 P1 cortex TGGATTTCTT (3) 18.2 0.0182 P1 cortex CTAAAAAGTG 9.1 0.0091 P1 cortex TCCAGACCTG (5) 9.1 0.0091 P1 cortex AATTTGAAAA (3) 4.5 0.0045 P1 cortex AGGTGAGAAA 4.5 0.0045 P1 cortex GGAAATGCAG (7) 4.5 0.0045 P1 cortex TTGATTTCTT (3) 4.5 0.0045 Hypothalamus GCCTTCCAAT (3) 56.1 0.0561 Hypothalamus TGTGTTGTGT (4) 32.6 0.0326 Hypothalamus TGGATTTCTT (3) 9.1 0.0091 Hypothalamus CATTGCCTTC (3) 5.4 0.0054 Hypothalamus CCTCCTCTAC 5.4 0.0054 Hypothalamus AGTGAAGAAG (2) 3.6 0.0036 Hypothalamus CAGTGTGTTC (4) 3.6 0.0036 Hypothalamus TTGATTTCTT (3) 3.6 0.0036 Hypothalamus ATTTTTAAGT (3) 1.8 0.0018 Hypothalamus ATTTTTTTTC (20) 1.8 0.0018 Hypothalamus CCATTGAAAA 1.8 0.0018 Hypothalamus GCCTTCCCAG (2) 1.8 0.0018 Hypothalamus GGAAATGCAG (7) 1.8 0.0018 Hypothalamus GGATAGCCAA (3) 1.8 0.0018 Hypothalamus GGGGGGGGGG (112) 1.8 0.0018 Hypothalamus TCAGAGACCT (6) 1.8 0.0018 E12.5 retina GCCTTCCAAT (3) 101.4 0.1014 E12.5 retina TGTGTTGTGT (4) 50.7 0.0507 E12.5 retina ATTTTTTTTC (20) 9.4 0.0094 E12.5 retina GGAAATGCAG (7) 7.5 0.0075 E12.5 retina CATTGCCTTC (3) 5.6 0.0056 E12.5 retina CTAAAAAGTG 3.8 0.0038 E12.5 retina GATGTTCAAA (3) 3.8 0.0038 E12.5 retina ACTAGTGCTT (80) 1.9 0.0019 E12.5 retina ATGTGATTGC (4) 1.9 0.0019 E12.5 retina CCAACAGGGT (4) 1.9 0.0019 E12.5 retina GCCTCCCAAT (4) 1.9 0.0019 E12.5 retina TTGATTTCTT (3) 1.9 0.0019 E14.5 retina GCCTTCCAAT (3) 107.5 0.1075 E14.5 retina TGTGTTGTGT (4) 31 0.031 E14.5 retina CCATTGAAAA 7.3 0.0073 E14.5 retina ATTTTTTTTC (20) 5.5 0.0055 E14.5 retina CATTGCCTTC (3) 5.5 0.0055 E14.5 retina GGATAGCCAA (3) 3.6 0.0036 E14.5 retina TAGTTTTTTT (4) 3.6 0.0036 E14.5 retina TGGATTTCTT (3) 3.6 0.0036 E14.5 retina TGTGTAGTGT (4) 3.6 0.0036 E14.5 retina AATTTGAAAA (3) 1.8 0.0018 E14.5 retina AGCAGAGAAA (9) 1.8 0.0018 E14.5 retina ATTTTTAAGT (3) 1.8 0.0018 E14.5 retina CCAACAGGGT (4) 1.8 0.0018 E14.5 retina CCTAATTCAC 1.8 0.0018 E14.5 retina TCAGAGACCT (6) 1.8 0.0018 E14.5 retina TTGATTCTCT (3) 1.8 0.0018 E16.5 retina GCCTTCCAAT (3) 77.9 0.0779 E16.5 retina TGTGTTGTGT (4) 29 0.029 E16.5 retina ATTTTTTTTC (20) 9.1 0.0091 E16.5 retina CTAAAAAGTG 9.1 0.0091 E16.5 retina GGAAATGCAG (7) 7.2 0.0072 E16.5 retina CATTGCCTTC (3) 5.4 0.0054 E16.5 retina CCATTGAAAA 5.4 0.0054 E16.5 retina GGATAGCCAA (3) 5.4 0.0054 E16.5 retina CCAACAGGGT (4) 3.6 0.0036 E16.5 retina AGTGAAGAAG (2) 1.8 0.0018 E16.5 retina AGTGAGAAGG (2) 1.8 0.0018 E16.5 retina GCCCTCCAAT 1.8 0.0018 E16.5 retina TAGTTTTTTA (2) 1.8 0.0018 E16.5 retina TGTGTAGTGT (4) 1.8 0.0018 E18.5 retina GCCTTCCAAT (3) 203.7 0.2037 E18.5 retina TGTGTTGTGT (4) 50.9 0.0509 E18.5 retina CTAAAAAGTG 9.1 0.0091 E18.5 retina GGATAGCCAA (3) 9.1 0.0091 E18.5 retina ATTTTTTTTC (20) 7.3 0.0073 E18.5 retina CATTGCCTTC (3) 7.3 0.0073 E18.5 retina GGAAATGCAG (7) 5.5 0.0055 E18.5 retina AGGTGAGAAA 3.6 0.0036 E18.5 retina CCTAATTCAC 3.6 0.0036 E18.5 retina GATGTTCAAA (3) 3.6 0.0036 E18.5 retina TGTGTAGTGT (4) 3.6 0.0036 E18.5 retina AGCAGAGAAA (9) 1.8 0.0018 E18.5 retina ATGTGATTGC (4) 1.8 0.0018 E18.5 retina CAGTGTGTTC (4) 1.8 0.0018 E18.5 retina CCATTGAAAA 1.8 0.0018 E18.5 retina GCCTTCCCAG (2) 1.8 0.0018 E18.5 retina TACAACTTGG (4) 1.8 0.0018 E18.5 retina TAGTTTTTTA (2) 1.8 0.0018 E18.5 retina TGCAAATTTT (2) 1.8 0.0018 E18.5 retina TGGATTTCTT (3) 1.8 0.0018 E18.5 retina TTGATTTCTT (3) 1.8 0.0018 P0.5 retina GCCTTCCAAT (3) 84.4 0.0844 P0.5 retina TGTGTTGTGT (4) 55 0.055 P0.5 retina CATTGCCTTC (3) 5.9 0.0059 P0.5 retina TACAACTTGG (4) 5.9 0.0059 P0.5 retina ATTTTTTTTC (20) 3.9 0.0039 P0.5 retina CCTCCTCTAC 3.9 0.0039 P0.5 retina GGAAATGCAG (7) 3.9 0.0039 P0.5 retina GGATAGCCAA (3) 3.9 0.0039 P0.5 retina TGTGTAGTGT (4) 3.9 0.0039 P0.5 retina AGGTGAGAAA 2 0.002 P0.5 retina CAGTGTGTTC (4) 2 0.002 P0.5 retina CTAAAAAGTG 2 0.002 P0.5 retina GCCTTCCCAG (2) 2 0.002 P0.5 retina TACACATAAA 2 0.002 P0.5 retina TGCACGCAAG 2 0.002 P0.5 retina TGGATTTCTT (3) 2 0.002 P2.5 retina GCCTTCCAAT (3) 184.8 0.1848 P2.5 retina TGTGTTGTGT (4) 77.4 0.0774 P2.5 retina ATTTTTTTTC (20) 8.8 0.0088 P2.5 retina CATTGCCTTC (3) 7 0.007 P2.5 retina GGAAATGCAG (7) 7 0.007 P2.5 retina GGGGGGGGGG (112) 7 0.007 P2.5 retina GGATAGCCAA (3) 5.3 0.0053 P2.5 retina TGTGTAGTGT (4) 5.3 0.0053 P2.5 retina AGCAGAGAAA (9) 3.5 0.0035 P2.5 retina GCCTCCCAAT (4) 3.5 0.0035 P2.5 retina TGGATTTCTT (3) 3.5 0.0035 P2.5 retina AGGTGAGAAA 1.8 0.0018 P2.5 retina AGTGAGAAGG (2) 1.8 0.0018 P2.5 retina CAGTGTGTTC (4) 1.8 0.0018 P2.5 retina CCTCCTCTAC 1.8 0.0018 P2.5 retina GCCTTCCCAG (2) 1.8 0.0018 P2.5 retina GGAACTTTGG (6) 1.8 0.0018 P2.5 retina GTACAACTTG (4) 1.8 0.0018 P2.5 retina TACAACTTGG (4) 1.8 0.0018 P2.5 retina TAGTTTTTTA (2) 1.8 0.0018 P2.5 retina TCAGAGACCT (6) 1.8 0.0018 P2.5 retina TGCAAATTTT (2) 1.8 0.0018 P4.5 retina GCCTTCCAAT (3) 225.9 0.2259 P4.5 retina TGTGTTGTGT (4) 79.3 0.0793 P4.5 retina CATTGCCTTC (3) 11.9 0.0119 P4.5 retina GGGGGGGGGG (112) 9.9 0.0099 P4.5 retina AGGTGAGAAA 5.9 0.0059 P4.5 retina CCTCCTCTAC 5.9 0.0059 P4.5 retina GGAAATGCAG (7) 5.9 0.0059 P4.5 retina TGGATTTCTT (3) 5.9 0.0059 P4.5 retina GCCCTCCAAT 4 0.004 P4.5 retina TGCAAATTTT (2) 4 0.004 P4.5 retina TGTGTAGTGT (4) 4 0.004 P4.5 retina ACTAGTGCTT (80) 2 0.002 P4.5 retina AGCAGAGAAA (9) 2 0.002 P4.5 retina AGTGAGAAGG (2) 2 0.002 P4.5 retina ATTTTTTTTC (20) 2 0.002 P4.5 retina GATGTTCAAA (3) 2 0.002 P4.5 retina GCCTCCCAAT (4) 2 0.002 P4.5 retina TCAGAGACCT (6) 2 0.002 P6.5 retina GCCTTCCAAT (3) 173.4 0.1734 P6.5 retina TGTGTTGTGT (4) 71.7 0.0717 P6.5 retina CATTGCCTTC (3) 11.7 0.0117 P6.5 retina TGTGTAGTGT (4) 10 0.01 P6.5 retina ATTTTTTTTC (20) 6.7 0.0067 P6.5 retina GGAAATGCAG (7) 5 0.005 P6.5 retina AGGTGAGAAA 3.3 0.0033 P6.5 retina GGGGGGGGGG (112) 3.3 0.0033 P6.5 retina TGCAAATTTT (2) 3.3 0.0033 P6.5 retina CAGTGTGTTC (4) 1.7 0.0017 P6.5 retina CCAACAGGGT (4) 1.7 0.0017 P6.5 retina CCACTGAAAA (6) 1.7 0.0017 P6.5 retina GCCTTCCCAG (2) 1.7 0.0017 P6.5 retina GTCAATTAAC (2) 1.7 0.0017 P6.5 retina TCAGAGACCT (6) 1.7 0.0017 P6.5 retina TGGATTTCTT (3) 1.7 0.0017 P6.5 retina TGTACACATA (3) 1.7 0.0017 P10.5 crx- retina GCCTTCCAAT (3) 46.4 0.0464 P10.5 crx- retina TGTGTTGTGT (4) 31.6 0.0316 P10.5 crx- retina TGTGTAGTGT (4) 11.1 0.0111 P10.5 crx- retina TGGATTTCTT (3) 5.6 0.0056 P10.5 crx- retina GGAAATGCAG (7) 3.7 0.0037 P10.5 crx- retina GGATAGCCAA (3) 3.7 0.0037 P10.5 crx- retina AGGTGAGAAA 1.9 0.0019 P10.5 crx- retina AGTGAAGAAG (2) 1.9 0.0019 P10.5 crx- retina AGTGAGAAGG (2) 1.9 0.0019 P10.5 crx- retina ATGTGATTGC (4) 1.9 0.0019 P10.5 crx- retina CATTGCCTTC (3) 1.9 0.0019 P10.5 crx- retina GTACAACTTG (4) 1.9 0.0019 P10.5 crx- retina GTCAATTAAC (2) 1.9 0.0019 P10.5 crx- retina TACAACTTGG (4) 1.9 0.0019 P10.5 crx- retina TCCAGACCTG (5) 1.9 0.0019 P10.5 crx- retina TTGATTTCTT (3) 1.9 0.0019 P10.5 crx+ retina GCCTTCCAAT (3) 111.5 0.1115 P10.5 crx+ retina TGTGTTGTGT (4) 75 0.075 P10.5 crx+ retina CATTGCCTTC (3) 11.5 0.0115 P10.5 crx+ retina GGAAATGCAG (7) 11.5 0.0115 P10.5 crx+ retina GGGGGGGGGG (112) 9.6 0.0096 P10.5 crx+ retina TGGATTTCTT (3) 7.7 0.0077 P10.5 crx+ retina ATTTTTTTTC (20) 3.8 0.0038 P10.5 crx+ retina GGATAGCCAA (3) 3.8 0.0038 P10.5 crx+ retina TACAACTTGG (4) 3.8 0.0038 P10.5 crx+ retina ATGTGATTGC (4) 1.9 0.0019 P10.5 crx+ retina CCTCCTCTAC 1.9 0.0019 P10.5 crx+ retina CTAAAAAGTG 1.9 0.0019 P10.5 crx+ retina GCCTCCCAAT (4) 1.9 0.0019 P10.5 crx+ retina GTACAACTTG (4) 1.9 0.0019 P10.5 crx+ retina TGCAAATTTT (2) 1.9 0.0019 P10.5 crx+ retina TGTGTAGTGT (4) 1.9 0.0019 P10.5 crx+ retina TTGATTCTCT (3) 1.9 0.0019 P10.5 crx+ retina TTGATTTCTT (3) 1.9 0.0019 Adult retinal GCCTTCCAAT (3) 105.5 0.1055 Adult retinal TGTGTTGTGT (4) 72.2 0.0722 Adult retinal CATTGCCTTC (3) 11.1 0.0111 Adult retinal CAGTGTGTTC (4) 9.3 0.0093 Adult retinal GGAAATGCAG (7) 7.4 0.0074 Adult retinal CCTCCTCTAC 5.6 0.0056 Adult retinal CCATTGAAAA 3.7 0.0037 Adult retinal GGGGGGGGGG (112) 3.7 0.0037 Adult retinal TGCAAATTTT (2) 3.7 0.0037 Adult retinal TGGATTTCTT (3) 3.7 0.0037 Adult retinal AGGTGAGAAA 1.9 0.0019 Adult retinal ATTTTTAAGT (3) 1.9 0.0019 Adult retinal ATTTTTTTTC (20) 1.9 0.0019 Adult retinal CCAACAGGGT (4) 1.9 0.0019 Adult retinal CTAAAAAGTG 1.9 0.0019 Adult retinal GGATAGCCAA (3) 1.9 0.0019 Adult retinal GTCAATTAAC (2) 1.9 0.0019 Adult retinal TGTGTAGTGT (4) 1.9 0.0019 ONL GCCTTCCAAT (3) 118.8 0.1188 ONL TGTGTTGTGT (4) 23 0.023 ONL CATTGCCTTC (3) 15.3 0.0153 ONL TACAACTTGG (4) 11.5 0.0115 ONL GGAAATGCAG (7) 9.6 0.0096 ONL GGATAGCCAA (3) 7.7 0.0077 ONL AGGTGAGAAA 5.7 0.0057 ONL CCTCCTCTAC 5.7 0.0057 ONL GGAACTTTGG (6) 5.7 0.0057 ONL TGCAAATTTT (2) 3.8 0.0038 ONL TGTACACATA (3) 3.8 0.0038 ONL TGTGTAGTGT (4) 3.8 0.0038 ONL ATTTTTTTTC (20) 1.9 0.0019 ONL CAGTGTGTTC (4) 1.9 0.0019 ONL CCACTGAAAA (6) 1.9 0.0019 ONL CCTAATTCAC 1.9 0.0019 ONL GGGGGGGGGG (112) 1.9 0.0019 ONL TACACATAAA 1.9 0.0019 ONL TCAGAGACCT (6) 1.9 0.0019