Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.220038	Ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	11	11 63.0 cM	13207
Gene Ontology	ATP binding | ATP dependent helicase activity | helicase activity | hydrolase activity | intracellular | nucleic acid binding | nucleus | RNA binding | RNA helicase activity
Human Homolog	DDX5[DEAD (Asp-Glu-Ala-Asp) box polypeptide 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 323 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTTTTTTTC (2) CATTGCCTTC CCACTGAAAA (4) CTAAAAAGTG GATGTTCAAA (2) GCCTCCCAAT GCCTTCCAAT GGAAATGCAG GTACAACTTG GTCAATTAAC TACAACTTGG TACACATAAA TAGTTTTTTA TGGATTTCTT TGTGTAGTGT TGTGTTGTGT TTGATTCTCT (2) 327.8 0.3278 Cb medulloblastoma ATGTGATTGC (4) ATTTTTTTTC (2) CATTGCCTTC GATGTTCAAA (2) GCCTTCCAAT GGGGGGGGGG GTCAATTAAC TACAACTTGG TAGTTTTTTA TGCAAATTTT TGGATTTCTT TGTGTAGTGT TGTGTTGTGT 235.6 0.2356 P8 GC+1d culture AGCAGAGAAA ATTTTTAAGT ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CCATTGAAAA CCTCCTCTAC CTAAAAAGTG GCCTTCCAAT GGAAATGCAG GGATAGCCAA (2) GGGGGGGGGG TACAACTTGG TCAGAGACCT (2) TGCAAATTTT TGCACGCAAG TGGATTTCTT TGTGTAGTGT TGTGTTGTGT 212.3 0.2123 P8 GC+SHH+1d culture ACTAGTGCTT (4) AGCAGAGAAA AGTGAGAAGG ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CTAAAAAGTG GCCCTCCAAT GCCTCCCAAT GCCTTCCAAT GGAAATGCAG GGATAGCCAA (2) GGGGGGGGGG TACAACTTGG TAGTTTTTTA TAGTTTTTTT (2) TCAGAGACCT (2) TGCAAATTTT TGCACGCAAG TGGATTTCTT TGTGTAGTGT TGTGTTGTGT TTGATTTCTT 280 0.28 3T3 fibroblasts AGTGAGAAGG CCTCCTCTAC GATGTTCAAA (2) GCCTTCCAAT GGGGGGGGGG GTCAATTAAC TGTGTTGTGT 77 0.077 E15 cortex ATTTTTTTTC (2) CATTGCCTTC CCAACAGGGT GCCTTCCAAT GGAAATGCAG GGATAGCCAA (2) GGGGGGGGGG GTCAATTAAC TCCAGACCTG (2) TGGATTTCTT TGTGTTGTGT 163 0.163 P1 cortex AATTTGAAAA (2) AGGTGAGAAA ATTTTTTTTC (2) CTAAAAAGTG GCCTTCCAAT GGAAATGCAG TCCAGACCTG (2) TGGATTTCTT TGTGTTGTGT TTGATTTCTT 177.1 0.1771 Hypothalamus AGTGAAGAAG ATTTTTAAGT ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CCATTGAAAA CCTCCTCTAC GCCTTCCAAT GCCTTCCCAG GGAAATGCAG GGATAGCCAA (2) GGGGGGGGGG TCAGAGACCT (2) TGGATTTCTT TGTGTTGTGT TTGATTTCTT 133.8 0.1338 E12.5 retina ACTAGTGCTT (4) ATGTGATTGC (4) ATTTTTTTTC (2) CATTGCCTTC CCAACAGGGT CTAAAAAGTG GATGTTCAAA (2) GCCTCCCAAT GCCTTCCAAT GGAAATGCAG TGTGTTGTGT TTGATTTCTT 191.7 0.1917 E14.5 retina AATTTGAAAA (2) AGCAGAGAAA ATTTTTAAGT ATTTTTTTTC (2) CATTGCCTTC CCAACAGGGT CCATTGAAAA CCTAATTCAC GCCTTCCAAT GGATAGCCAA (2) TAGTTTTTTT (2) TCAGAGACCT (2) TGGATTTCTT TGTGTAGTGT TGTGTTGTGT TTGATTCTCT (2) 183.8 0.1838 E16.5 retina AGTGAAGAAG AGTGAGAAGG ATTTTTTTTC (2) CATTGCCTTC CCAACAGGGT CCATTGAAAA CTAAAAAGTG GCCCTCCAAT GCCTTCCAAT GGAAATGCAG GGATAGCCAA (2) TAGTTTTTTA TGTGTAGTGT TGTGTTGTGT 161.1 0.1611 E18.5 retina AGCAGAGAAA AGGTGAGAAA ATGTGATTGC (4) ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CCATTGAAAA CCTAATTCAC CTAAAAAGTG GATGTTCAAA (2) GCCTTCCAAT GCCTTCCCAG GGAAATGCAG GGATAGCCAA (2) TACAACTTGG TAGTTTTTTA TGCAAATTTT TGGATTTCTT TGTGTAGTGT TGTGTTGTGT TTGATTTCTT 325.3 0.3253 P0.5 retina AGGTGAGAAA ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CCTCCTCTAC CTAAAAAGTG GCCTTCCAAT GCCTTCCCAG GGAAATGCAG GGATAGCCAA (2) TACAACTTGG TACACATAAA TGCACGCAAG TGGATTTCTT TGTGTAGTGT TGTGTTGTGT 184.7 0.1847 P2.5 retina AGCAGAGAAA AGGTGAGAAA AGTGAGAAGG ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CCTCCTCTAC GCCTCCCAAT GCCTTCCAAT GCCTTCCCAG GGAAATGCAG GGAACTTTGG GGATAGCCAA (2) GGGGGGGGGG GTACAACTTG TACAACTTGG TAGTTTTTTA TCAGAGACCT (2) TGCAAATTTT TGGATTTCTT TGTGTAGTGT TGTGTTGTGT 332.9 0.3329 P4.5 retina ACTAGTGCTT (4) AGCAGAGAAA AGGTGAGAAA AGTGAGAAGG ATTTTTTTTC (2) CATTGCCTTC CCTCCTCTAC GATGTTCAAA (2) GCCCTCCAAT GCCTCCCAAT GCCTTCCAAT GGAAATGCAG GGGGGGGGGG TCAGAGACCT (2) TGCAAATTTT TGGATTTCTT TGTGTAGTGT TGTGTTGTGT 376.6 0.3766 P6.5 retina AGGTGAGAAA ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CCAACAGGGT CCACTGAAAA (4) GCCTTCCAAT GCCTTCCCAG GGAAATGCAG GGGGGGGGGG GTCAATTAAC TCAGAGACCT (2) TGCAAATTTT TGGATTTCTT TGTACACATA TGTGTAGTGT TGTGTTGTGT 302 0.302 P10.5 crx- retina AGGTGAGAAA AGTGAAGAAG AGTGAGAAGG ATGTGATTGC (4) CATTGCCTTC GCCTTCCAAT GGAAATGCAG GGATAGCCAA (2) GTACAACTTG GTCAATTAAC TACAACTTGG TCCAGACCTG (2) TGGATTTCTT TGTGTAGTGT TGTGTTGTGT TTGATTTCTT 121.1 0.1211 P10.5 crx+ retina ATGTGATTGC (4) ATTTTTTTTC (2) CATTGCCTTC CCTCCTCTAC CTAAAAAGTG GCCTCCCAAT GCCTTCCAAT GGAAATGCAG GGATAGCCAA (2) GGGGGGGGGG GTACAACTTG TACAACTTGG TGCAAATTTT TGGATTTCTT TGTGTAGTGT TGTGTTGTGT TTGATTCTCT (2) TTGATTTCTT 255.3 0.2553 Adult retinal AGGTGAGAAA ATTTTTAAGT ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CCAACAGGGT CCATTGAAAA CCTCCTCTAC CTAAAAAGTG GCCTTCCAAT GGAAATGCAG GGATAGCCAA (2) GGGGGGGGGG GTCAATTAAC TGCAAATTTT TGGATTTCTT TGTGTAGTGT TGTGTTGTGT 241.1 0.2411 ONL AGGTGAGAAA ATTTTTTTTC (2) CAGTGTGTTC CATTGCCTTC CCACTGAAAA (4) CCTAATTCAC CCTCCTCTAC GCCTTCCAAT GGAAATGCAG GGAACTTTGG GGATAGCCAA (2) GGGGGGGGGG TACAACTTGG TACACATAAA TCAGAGACCT (2) TGCAAATTTT TGTACACATA TGTGTAGTGT TGTGTTGTGT 227.7 0.2277