Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.220038	Ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	11	11 63.0 cM	13207
Gene Ontology	ATP binding | ATP dependent helicase activity | helicase activity | hydrolase activity | intracellular | nucleic acid binding | nucleus | RNA binding | RNA helicase activity
Human Homolog	DDX5[DEAD (Asp-Glu-Ala-Asp) box polypeptide 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 180 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTTCCAAT 223.5 0.2235 P8 Cb GC TGTGTTGTGT 50.6 0.0506 P8 Cb GC CATTGCCTTC 17.9 0.0179 P8 Cb GC TACAACTTGG 4.9 0.0049 P8 Cb GC GCCTCCCAAT 3.3 0.0033 P8 Cb GC GGAAATGCAG 3.3 0.0033 P8 Cb GC CTAAAAAGTG 1.6 0.0016 P8 Cb GC TACACATAAA 1.6 0.0016 Cb medulloblastoma GCCTTCCAAT 115.6 0.1156 Cb medulloblastoma TGTGTTGTGT 69.4 0.0694 Cb medulloblastoma ATGTGATTGC (4) 2.3 0.0023 Cb medulloblastoma CATTGCCTTC 2.3 0.0023 Cb medulloblastoma TACAACTTGG 2.3 0.0023 Cb medulloblastoma TGCAAATTTT 2.3 0.0023 P8 GC+1d culture GCCTTCCAAT 114.2 0.1142 P8 GC+1d culture TGTGTTGTGT 45.7 0.0457 P8 GC+1d culture CATTGCCTTC 8 0.008 P8 GC+1d culture TGCAAATTTT 6.8 0.0068 P8 GC+1d culture CCATTGAAAA 2.3 0.0023 P8 GC+1d culture CCTCCTCTAC 2.3 0.0023 P8 GC+1d culture GGAAATGCAG 2.3 0.0023 P8 GC+1d culture GGATAGCCAA (2) 2.3 0.0023 P8 GC+1d culture ATTTTTAAGT 1.1 0.0011 P8 GC+1d culture CTAAAAAGTG 1.1 0.0011 P8 GC+1d culture TACAACTTGG 1.1 0.0011 P8 GC+SHH+1d culture GCCTTCCAAT 144 0.144 P8 GC+SHH+1d culture TGTGTTGTGT 60.9 0.0609 P8 GC+SHH+1d culture GGAAATGCAG 9.4 0.0094 P8 GC+SHH+1d culture CATTGCCTTC 8.2 0.0082 P8 GC+SHH+1d culture TACAACTTGG 8.2 0.0082 P8 GC+SHH+1d culture TGCAAATTTT 8.2 0.0082 P8 GC+SHH+1d culture GGATAGCCAA (2) 3.5 0.0035 P8 GC+SHH+1d culture AGTGAGAAGG 1.2 0.0012 P8 GC+SHH+1d culture CTAAAAAGTG 1.2 0.0012 P8 GC+SHH+1d culture GCCCTCCAAT 1.2 0.0012 P8 GC+SHH+1d culture GCCTCCCAAT 1.2 0.0012 P8 GC+SHH+1d culture TAGTTTTTTT (2) 1.2 0.0012 P8 GC+SHH+1d culture TTGATTTCTT 1.2 0.0012 3T3 fibroblasts TGTGTTGTGT 28 0.028 3T3 fibroblasts GCCTTCCAAT 21 0.021 3T3 fibroblasts CCTCCTCTAC 10.5 0.0105 3T3 fibroblasts AGTGAGAAGG 3.5 0.0035 E15 cortex GCCTTCCAAT 59.4 0.0594 E15 cortex TGTGTTGTGT 29.7 0.0297 E15 cortex GGAAATGCAG 19.8 0.0198 E15 cortex CATTGCCTTC 4.9 0.0049 E15 cortex CCAACAGGGT 4.9 0.0049 E15 cortex GGATAGCCAA (2) 4.9 0.0049 P1 cortex TGTGTTGTGT 54.5 0.0545 P1 cortex GCCTTCCAAT 27.3 0.0273 P1 cortex CTAAAAAGTG 9.1 0.0091 P1 cortex GGAAATGCAG 4.5 0.0045 P1 cortex TTGATTTCTT 4.5 0.0045 Hypothalamus GCCTTCCAAT 56.1 0.0561 Hypothalamus TGTGTTGTGT 32.6 0.0326 Hypothalamus CATTGCCTTC 5.4 0.0054 Hypothalamus CCTCCTCTAC 5.4 0.0054 Hypothalamus TTGATTTCTT 3.6 0.0036 Hypothalamus ATTTTTAAGT 1.8 0.0018 Hypothalamus CCATTGAAAA 1.8 0.0018 Hypothalamus GGAAATGCAG 1.8 0.0018 Hypothalamus GGATAGCCAA (2) 1.8 0.0018 E12.5 retina GCCTTCCAAT 101.4 0.1014 E12.5 retina TGTGTTGTGT 50.7 0.0507 E12.5 retina GGAAATGCAG 7.5 0.0075 E12.5 retina CATTGCCTTC 5.6 0.0056 E12.5 retina CTAAAAAGTG 3.8 0.0038 E12.5 retina ATGTGATTGC (4) 1.9 0.0019 E12.5 retina CCAACAGGGT 1.9 0.0019 E12.5 retina GCCTCCCAAT 1.9 0.0019 E12.5 retina TTGATTTCTT 1.9 0.0019 E14.5 retina GCCTTCCAAT 107.5 0.1075 E14.5 retina TGTGTTGTGT 31 0.031 E14.5 retina CCATTGAAAA 7.3 0.0073 E14.5 retina CATTGCCTTC 5.5 0.0055 E14.5 retina GGATAGCCAA (2) 3.6 0.0036 E14.5 retina TAGTTTTTTT (2) 3.6 0.0036 E14.5 retina ATTTTTAAGT 1.8 0.0018 E14.5 retina CCAACAGGGT 1.8 0.0018 E14.5 retina CCTAATTCAC 1.8 0.0018 E16.5 retina GCCTTCCAAT 77.9 0.0779 E16.5 retina TGTGTTGTGT 29 0.029 E16.5 retina CTAAAAAGTG 9.1 0.0091 E16.5 retina GGAAATGCAG 7.2 0.0072 E16.5 retina CATTGCCTTC 5.4 0.0054 E16.5 retina CCATTGAAAA 5.4 0.0054 E16.5 retina GGATAGCCAA (2) 5.4 0.0054 E16.5 retina CCAACAGGGT 3.6 0.0036 E16.5 retina AGTGAGAAGG 1.8 0.0018 E16.5 retina GCCCTCCAAT 1.8 0.0018 E18.5 retina GCCTTCCAAT 203.7 0.2037 E18.5 retina TGTGTTGTGT 50.9 0.0509 E18.5 retina CTAAAAAGTG 9.1 0.0091 E18.5 retina GGATAGCCAA (2) 9.1 0.0091 E18.5 retina CATTGCCTTC 7.3 0.0073 E18.5 retina GGAAATGCAG 5.5 0.0055 E18.5 retina CCTAATTCAC 3.6 0.0036 E18.5 retina ATGTGATTGC (4) 1.8 0.0018 E18.5 retina CCATTGAAAA 1.8 0.0018 E18.5 retina TACAACTTGG 1.8 0.0018 E18.5 retina TGCAAATTTT 1.8 0.0018 E18.5 retina TTGATTTCTT 1.8 0.0018 P0.5 retina GCCTTCCAAT 84.4 0.0844 P0.5 retina TGTGTTGTGT 55 0.055 P0.5 retina CATTGCCTTC 5.9 0.0059 P0.5 retina TACAACTTGG 5.9 0.0059 P0.5 retina CCTCCTCTAC 3.9 0.0039 P0.5 retina GGAAATGCAG 3.9 0.0039 P0.5 retina GGATAGCCAA (2) 3.9 0.0039 P0.5 retina CTAAAAAGTG 2 0.002 P0.5 retina TACACATAAA 2 0.002 P2.5 retina GCCTTCCAAT 184.8 0.1848 P2.5 retina TGTGTTGTGT 77.4 0.0774 P2.5 retina CATTGCCTTC 7 0.007 P2.5 retina GGAAATGCAG 7 0.007 P2.5 retina GGATAGCCAA (2) 5.3 0.0053 P2.5 retina GCCTCCCAAT 3.5 0.0035 P2.5 retina AGTGAGAAGG 1.8 0.0018 P2.5 retina CCTCCTCTAC 1.8 0.0018 P2.5 retina TACAACTTGG 1.8 0.0018 P2.5 retina TGCAAATTTT 1.8 0.0018 P4.5 retina GCCTTCCAAT 225.9 0.2259 P4.5 retina TGTGTTGTGT 79.3 0.0793 P4.5 retina CATTGCCTTC 11.9 0.0119 P4.5 retina CCTCCTCTAC 5.9 0.0059 P4.5 retina GGAAATGCAG 5.9 0.0059 P4.5 retina GCCCTCCAAT 4 0.004 P4.5 retina TGCAAATTTT 4 0.004 P4.5 retina AGTGAGAAGG 2 0.002 P4.5 retina GCCTCCCAAT 2 0.002 P6.5 retina GCCTTCCAAT 173.4 0.1734 P6.5 retina TGTGTTGTGT 71.7 0.0717 P6.5 retina CATTGCCTTC 11.7 0.0117 P6.5 retina GGAAATGCAG 5 0.005 P6.5 retina TGCAAATTTT 3.3 0.0033 P6.5 retina CCAACAGGGT 1.7 0.0017 P6.5 retina TGTACACATA 1.7 0.0017 P10.5 crx- retina GCCTTCCAAT 46.4 0.0464 P10.5 crx- retina TGTGTTGTGT 31.6 0.0316 P10.5 crx- retina GGAAATGCAG 3.7 0.0037 P10.5 crx- retina GGATAGCCAA (2) 3.7 0.0037 P10.5 crx- retina AGTGAGAAGG 1.9 0.0019 P10.5 crx- retina ATGTGATTGC (4) 1.9 0.0019 P10.5 crx- retina CATTGCCTTC 1.9 0.0019 P10.5 crx- retina TACAACTTGG 1.9 0.0019 P10.5 crx- retina TTGATTTCTT 1.9 0.0019 P10.5 crx+ retina GCCTTCCAAT 111.5 0.1115 P10.5 crx+ retina TGTGTTGTGT 75 0.075 P10.5 crx+ retina CATTGCCTTC 11.5 0.0115 P10.5 crx+ retina GGAAATGCAG 11.5 0.0115 P10.5 crx+ retina GGATAGCCAA (2) 3.8 0.0038 P10.5 crx+ retina TACAACTTGG 3.8 0.0038 P10.5 crx+ retina ATGTGATTGC (4) 1.9 0.0019 P10.5 crx+ retina CCTCCTCTAC 1.9 0.0019 P10.5 crx+ retina CTAAAAAGTG 1.9 0.0019 P10.5 crx+ retina GCCTCCCAAT 1.9 0.0019 P10.5 crx+ retina TGCAAATTTT 1.9 0.0019 P10.5 crx+ retina TTGATTTCTT 1.9 0.0019 Adult retinal GCCTTCCAAT 105.5 0.1055 Adult retinal TGTGTTGTGT 72.2 0.0722 Adult retinal CATTGCCTTC 11.1 0.0111 Adult retinal GGAAATGCAG 7.4 0.0074 Adult retinal CCTCCTCTAC 5.6 0.0056 Adult retinal CCATTGAAAA 3.7 0.0037 Adult retinal TGCAAATTTT 3.7 0.0037 Adult retinal ATTTTTAAGT 1.9 0.0019 Adult retinal CCAACAGGGT 1.9 0.0019 Adult retinal CTAAAAAGTG 1.9 0.0019 Adult retinal GGATAGCCAA (2) 1.9 0.0019 ONL GCCTTCCAAT 118.8 0.1188 ONL TGTGTTGTGT 23 0.023 ONL CATTGCCTTC 15.3 0.0153 ONL TACAACTTGG 11.5 0.0115 ONL GGAAATGCAG 9.6 0.0096 ONL GGATAGCCAA (2) 7.7 0.0077 ONL CCTCCTCTAC 5.7 0.0057 ONL TGCAAATTTT 3.8 0.0038 ONL TGTACACATA 3.8 0.0038 ONL CCTAATTCAC 1.9 0.0019 ONL TACACATAAA 1.9 0.0019