Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22130	2610007O09Rik	RIKEN cDNA 2610007O09 gene	2		66579
Mm.22130	Rpn2	ribophorin II	2	2 91.0 cM	20014
Mm.22130	Rpn2-rs1	ribophorin 2, related sequence 1	7	7 66.0 cM	20015
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 140 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGTTACATC (5) 11.4 0.0114 P8 Cb GC GAGAGACTGT (4) 8.2 0.0082 P8 Cb GC CTGGGCCAGA (9) 3.3 0.0033 P8 Cb GC GACCACGTGG (5) 3.3 0.0033 P8 Cb GC CTTGGGCCCA (5) 1.6 0.0016 P8 Cb GC GCTTGTGGAT (5) 1.6 0.0016 P8 Cb GC TTTGGGCCCA (4) 1.6 0.0016 Cb medulloblastoma GACCACGTGG (5) 9.2 0.0092 Cb medulloblastoma CAGTTACATC (5) 6.9 0.0069 Cb medulloblastoma GATCACAGCA (3) 4.6 0.0046 Cb medulloblastoma TTTGGGCCCA (4) 4.6 0.0046 Cb medulloblastoma GAAGACCCAA (6) 2.3 0.0023 Cb medulloblastoma GAGAGACTGT (4) 2.3 0.0023 Cb medulloblastoma GCTTGTGGAT (5) 2.3 0.0023 Cb medulloblastoma GTGTGAAAGG (4) 2.3 0.0023 Cb medulloblastoma TAAGCACAGC (3) 2.3 0.0023 Cb medulloblastoma TGTGTGCGAG (8) 2.3 0.0023 P8 GC+1d culture GAGAGACTGT (4) 9.1 0.0091 P8 GC+1d culture TTTGGGCCCA (4) 9.1 0.0091 P8 GC+1d culture CAGTTACATC (5) 6.8 0.0068 P8 GC+1d culture TAAGCACAGG (5) 2.3 0.0023 P8 GC+1d culture AAAGAACAGT (8) 1.1 0.0011 P8 GC+1d culture CTGGGCCAGA (9) 1.1 0.0011 P8 GC+1d culture TAAGCACAGC (3) 1.1 0.0011 P8 GC+1d culture TGTGTGCGAG (8) 1.1 0.0011 P8 GC+SHH+1d culture CAGTTACATC (5) 11.7 0.0117 P8 GC+SHH+1d culture TTTGGGCCCA (4) 5.9 0.0059 P8 GC+SHH+1d culture GAGAGACTGT (4) 4.7 0.0047 P8 GC+SHH+1d culture GACCACGTGG (5) 3.5 0.0035 P8 GC+SHH+1d culture GGGTACAGGT (5) 1.2 0.0012 3T3 fibroblasts GACCACGTGG (5) 28 0.028 3T3 fibroblasts TTTGGGCCCA (4) 10.5 0.0105 3T3 fibroblasts GAGAGACTGT (4) 7 0.007 3T3 fibroblasts CAGTTACATC (5) 3.5 0.0035 3T3 fibroblasts GTGTGAAAGG (4) 3.5 0.0035 3T3 fibroblasts TTGGGCCCAG (5) 3.5 0.0035 E15 cortex GACCACGTGG (5) 14.8 0.0148 E15 cortex GAGAGACTGT (4) 9.9 0.0099 E15 cortex GTGTGAAAGG (4) 9.9 0.0099 E15 cortex CTGGGCCAGA (9) 4.9 0.0049 E15 cortex TTTGGGCCCA (4) 4.9 0.0049 P1 cortex GAGAGACTGT (4) 4.5 0.0045 P1 cortex GTGTGAAAGG (4) 4.5 0.0045 P1 cortex TAAGCACAGG (5) 4.5 0.0045 P1 cortex TTTGGGCCCA (4) 4.5 0.0045 Hypothalamus CAGTTACATC (5) 5.4 0.0054 Hypothalamus CTGGGCCAGA (9) 5.4 0.0054 Hypothalamus GACCACGTGG (5) 5.4 0.0054 Hypothalamus GAGAGACTGT (4) 5.4 0.0054 Hypothalamus TTTGGGCCCA (4) 5.4 0.0054 Hypothalamus AAAAGTGTCA (4) 3.6 0.0036 Hypothalamus CAACACCAAT (3) 1.8 0.0018 Hypothalamus TGTGTGCGAG (8) 1.8 0.0018 E12.5 retina TTTGGGCCCA (4) 13.1 0.0131 E12.5 retina CAGTTACATC (5) 7.5 0.0075 E12.5 retina GAGAGACTGT (4) 7.5 0.0075 E12.5 retina GACCACGTGG (5) 3.8 0.0038 E12.5 retina TAAGCACAGC (3) 1.9 0.0019 E14.5 retina TTTGGGCCCA (4) 7.3 0.0073 E14.5 retina CAGTTACATC (5) 5.5 0.0055 E14.5 retina GAAACACAAA (7) 3.6 0.0036 E14.5 retina GAGAGACTGT (4) 3.6 0.0036 E14.5 retina ATTTTGGAAT (8) 1.8 0.0018 E14.5 retina GAAGACCCAA (6) 1.8 0.0018 E14.5 retina GACCACGTGG (5) 1.8 0.0018 E14.5 retina GGGTACAGGT (5) 1.8 0.0018 E14.5 retina TAAGCACAGC (3) 1.8 0.0018 E16.5 retina CAGTTACATC (5) 12.7 0.0127 E16.5 retina GAGAGACTGT (4) 10.9 0.0109 E16.5 retina TTTGGGCCCA (4) 10.9 0.0109 E16.5 retina TAAGCACAGC (3) 3.6 0.0036 E16.5 retina ATTTTGGAAT (8) 1.8 0.0018 E16.5 retina TAAGCACAGG (5) 1.8 0.0018 E18.5 retina CAGTTACATC (5) 9.1 0.0091 E18.5 retina GAGAGACTGT (4) 5.5 0.0055 E18.5 retina GTGTGAAAGG (4) 5.5 0.0055 E18.5 retina TTTGGGCCCA (4) 5.5 0.0055 E18.5 retina TAAGCACAGC (3) 3.6 0.0036 E18.5 retina AAAGAACAGT (8) 1.8 0.0018 E18.5 retina CTGGGCCAGA (9) 1.8 0.0018 E18.5 retina GACCACGTGG (5) 1.8 0.0018 E18.5 retina GCTTGTGGAT (5) 1.8 0.0018 P0.5 retina CAGTTACATC (5) 9.8 0.0098 P0.5 retina TTTGGGCCCA (4) 9.8 0.0098 P0.5 retina GAGAGACTGT (4) 5.9 0.0059 P0.5 retina TAAGCACAGG (5) 5.9 0.0059 P0.5 retina GACCACGTGG (5) 3.9 0.0039 P2.5 retina CAGTTACATC (5) 10.6 0.0106 P2.5 retina TTTGGGCCCA (4) 8.8 0.0088 P2.5 retina GAGAGACTGT (4) 7 0.007 P2.5 retina GACCACGTGG (5) 1.8 0.0018 P2.5 retina TAAGCACAGG (5) 1.8 0.0018 P4.5 retina CAGTTACATC (5) 15.9 0.0159 P4.5 retina TTTGGGCCCA (4) 7.9 0.0079 P4.5 retina CTTGGGCCCA (5) 2 0.002 P4.5 retina GACCACGTGG (5) 2 0.002 P4.5 retina GAGAGACTGT (4) 2 0.002 P6.5 retina TTTGGGCCCA (4) 13.3 0.0133 P6.5 retina GACCACGTGG (5) 10 0.01 P6.5 retina CAGTTACATC (5) 3.3 0.0033 P6.5 retina GTGTGAAAGG (4) 3.3 0.0033 P6.5 retina CAACACCAAT (3) 1.7 0.0017 P6.5 retina CTGGGCCAGA (9) 1.7 0.0017 P6.5 retina GAGAGACTGT (4) 1.7 0.0017 P6.5 retina GATCACAGCA (3) 1.7 0.0017 P6.5 retina TGTGTGCGAG (8) 1.7 0.0017 P10.5 crx- retina GACCACGTGG (5) 20.4 0.0204 P10.5 crx- retina GAGAGACTGT (4) 9.3 0.0093 P10.5 crx- retina ATTTTGGAAT (8) 5.6 0.0056 P10.5 crx- retina CAGTTACATC (5) 5.6 0.0056 P10.5 crx- retina TTTGGGCCCA (4) 5.6 0.0056 P10.5 crx- retina CTGGGCCAGA (9) 1.9 0.0019 P10.5 crx- retina TGTGTGCGAG (8) 1.9 0.0019 P10.5 crx+ retina GACCACGTGG (5) 13.5 0.0135 P10.5 crx+ retina CAGTTACATC (5) 7.7 0.0077 P10.5 crx+ retina TTTGGGCCCA (4) 7.7 0.0077 P10.5 crx+ retina GTGTGAAAGG (4) 5.8 0.0058 P10.5 crx+ retina GAGAGACTGT (4) 3.8 0.0038 P10.5 crx+ retina ATTTTGGAAT (8) 1.9 0.0019 P10.5 crx+ retina GAAGACCCAA (6) 1.9 0.0019 P10.5 crx+ retina TAAGCACAGG (5) 1.9 0.0019 Adult retinal GACCACGTGG (5) 18.5 0.0185 Adult retinal TTTGGGCCCA (4) 9.3 0.0093 Adult retinal GAGAGACTGT (4) 5.6 0.0056 Adult retinal GAAGACCCAA (6) 3.7 0.0037 Adult retinal TTGGGCCCAG (5) 3.7 0.0037 Adult retinal AAAGAACAGT (8) 1.9 0.0019 Adult retinal CAGTTACATC (5) 1.9 0.0019 Adult retinal CTTGGGCCCA (5) 1.9 0.0019 Adult retinal GGGTACAGGT (5) 1.9 0.0019 Adult retinal TAAGCACAGG (5) 1.9 0.0019 Adult retinal TGTGTGCGAG (8) 1.9 0.0019 ONL GACCACGTGG (5) 17.2 0.0172 ONL TTTGGGCCCA (4) 5.7 0.0057 ONL AAAAGTGTCA (4) 1.9 0.0019 ONL CAACACCAAT (3) 1.9 0.0019 ONL CTGGGCCAGA (9) 1.9 0.0019 ONL GAAACACAAA (7) 1.9 0.0019 ONL GAGAGACTGT (4) 1.9 0.0019 ONL TAAGCACAGG (5) 1.9 0.0019