Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.221403	Pdgfra	platelet derived growth factor receptor, alpha polypeptide	5	5 C3.3 (5 42.0 cM)	18595
Gene Ontology	ATP binding | extracellular space | integral to membrane | kinase activity | male genital morphogenesis | membrane | organogenesis | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | receptor activity | transferase activity | transmembrane receptor protein tyrosine kinase activity | transmembrane receptor protein tyrosine kinase signaling pathway | vascular endothelial growth factor receptor activity
Human Homolog	PDGFRA[platelet-derived growth factor receptor, alpha polypeptide]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 55 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGAACTAGC (2) CTCATTCTGG TATTTTTTTC (3) TCAGTATTTT TTCTATGTGT TTTTGTTTTA 16.4 0.0164 Cb medulloblastoma AAGAACTAGC (2) TATTTTTTTC (3) TTTTGTTTTA 9.2 0.0092 P8 GC+1d culture AAGAACTAGC (2) ATTTCTTTAC (2) TATTTTTTTC (3) TCAGTATTTT TTCTATGTGT TTTTGTTTTA 11.2 0.0112 P8 GC+SHH+1d culture AAGAACTAGC (2) ATTTCTTTAC (2) CTCATTCTGG TCAGTATTTT TTCTATGTGT TTTTGTTTTA 10.7 0.0107 3T3 fibroblasts GTGGTGTGGT (2) TTCTATGTGT TTTTGTTTTA 10.5 0.0105 P1 cortex AAGAACTAGC (2) CAAGGAAGGC 9 0.009 Hypothalamus AAGAACTAGC (2) 1.8 0.0018 E12.5 retina AAGAACTAGC (2) ATGGATATGT TTCTATGTGT TTTTGTTTTA 7.6 0.0076 E14.5 retina TATTTTTTTC (3) 1.8 0.0018 E18.5 retina AAGAACTAGC (2) 1.8 0.0018 P0.5 retina AAGAACTAGC (2) TTCTATGTGT 4 0.004 P2.5 retina AAGAACTAGC (2) TATTTTTTTC (3) 5.3 0.0053 P4.5 retina AAGAACTAGC (2) CAAGGAAGGC TTTTGTTTTA 10 0.01 P6.5 retina AAGAACTAGC (2) ATGGATATGT GTGGTGTGGT (2) TTCTATGTGT TTTTGTTTTA 13.5 0.0135 P10.5 crx- retina AAGAACTAGC (2) CAAGGAAGGC TTCTATGTGT 7.5 0.0075 P10.5 crx+ retina AAGAACTAGC (2) CAAGGAAGGC TTCTATGTGT 11.5 0.0115 ONL ATGGATATGT ATTTCTTTAC (2) GTGGTGTGGT (2) TTTTGTTTTA 28.7 0.0287