Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.223674
Syp
synaptophysin
X
X 1.5 cM
20977
Mm.223674
A230093K24Rik
RIKEN cDNA A230093K24 gene
X
319279
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 89 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GGGGCCCTGG
(
11
)
1.6
0.0016
P8 Cb GC
GTGGGTTCCG
(
4
)
1.6
0.0016
P8 Cb GC
GTTGGGAGCT
(
3
)
1.6
0.0016
Cb medulloblastoma
GTTGGGAGCT
(
3
)
13.9
0.0139
Cb medulloblastoma
GAGTGGGTCG
(
2
)
9.2
0.0092
Cb medulloblastoma
CACTAGGGGC
(
2
)
2.3
0.0023
Cb medulloblastoma
GGGGCCCTGG
(
11
)
2.3
0.0023
Cb medulloblastoma
TCGATATCAA
(
2
)
2.3
0.0023
P8 GC+1d culture
GTTGGGAGCT
(
3
)
29.7
0.0297
P8 GC+1d culture
ATCACAGGCA (
5
)
4.6
0.0046
P8 GC+1d culture
CAGGGAACTG (
3
)
2.3
0.0023
P8 GC+1d culture
CACTAGGGGC
(
2
)
1.1
0.0011
P8 GC+1d culture
CGCGCACCTC
(
2
)
1.1
0.0011
P8 GC+1d culture
GAGTGGGTCG
(
2
)
1.1
0.0011
P8 GC+1d culture
GTGGGTTCCG
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GTTGGGAGCT
(
3
)
11.7
0.0117
P8 GC+SHH+1d culture
ATCACAGGCA (
5
)
2.3
0.0023
P8 GC+SHH+1d culture
CAGGGAACTG (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
CGCGCACCTC
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GAGTGGGTCG
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGGGTTCCG
(
4
)
1.2
0.0012
3T3 fibroblasts
ATCACAGGCA (
5
)
3.5
0.0035
E15 cortex
GTTGGGAGCT
(
3
)
14.8
0.0148
E15 cortex
ATCACAGGCA (
5
)
4.9
0.0049
E15 cortex
CACTAGGGGC
(
2
)
4.9
0.0049
P1 cortex
GTTGGGAGCT
(
3
)
22.7
0.0227
P1 cortex
ATCACAGGCA (
5
)
4.5
0.0045
Hypothalamus
TCGATATCAA
(
2
)
16.3
0.0163
Hypothalamus
GTTGGGAGCT
(
3
)
9.1
0.0091
Hypothalamus
CGCGCACCTC
(
2
)
5.4
0.0054
Hypothalamus
GAGTGGGTCG
(
2
)
5.4
0.0054
Hypothalamus
ATCACAGGCA (
5
)
3.6
0.0036
Hypothalamus
CACTAGGGGC
(
2
)
3.6
0.0036
Hypothalamus
CAGGGAACTG (
3
)
3.6
0.0036
Hypothalamus
GCCACACACC (
6
)
3.6
0.0036
Hypothalamus
GGGGCCCTGG
(
11
)
1.8
0.0018
Hypothalamus
GGGGGCCCTG (
11
)
1.8
0.0018
Hypothalamus
GTGGGTTCCG
(
4
)
1.8
0.0018
E14.5 retina
ATCACAGGCA (
5
)
3.6
0.0036
E14.5 retina
GAGTGGGTCG
(
2
)
1.8
0.0018
E14.5 retina
GGGGCCCTGG
(
11
)
1.8
0.0018
E14.5 retina
GTTGGGAGCT
(
3
)
1.8
0.0018
E14.5 retina
TCGATATCAA
(
2
)
1.8
0.0018
E16.5 retina
GGGGCACTGG (
6
)
1.8
0.0018
E16.5 retina
GTTGGGAGCT
(
3
)
1.8
0.0018
E18.5 retina
ATCACAGGCA (
5
)
1.8
0.0018
E18.5 retina
CAGGGAACTG (
3
)
1.8
0.0018
P0.5 retina
GAGTGGGTCG
(
2
)
3.9
0.0039
P0.5 retina
GTTGGGAGCT
(
3
)
3.9
0.0039
P0.5 retina
ATCACAGGCA (
5
)
2
0.002
P0.5 retina
CACTAGGGGC
(
2
)
2
0.002
P2.5 retina
ATCACAGGCA (
5
)
3.5
0.0035
P2.5 retina
CAGGGAACTG (
3
)
1.8
0.0018
P2.5 retina
GTTGGGAGCT
(
3
)
1.8
0.0018
P4.5 retina
GAGTGGGTCG
(
2
)
4
0.004
P4.5 retina
GTGGGTTCCG
(
4
)
4
0.004
P4.5 retina
GTTGGGAGCT
(
3
)
4
0.004
P4.5 retina
CACTAGGGGC
(
2
)
2
0.002
P4.5 retina
CAGGGAACTG (
3
)
2
0.002
P4.5 retina
GGGGCCCTGG
(
11
)
2
0.002
P6.5 retina
GTTGGGAGCT
(
3
)
11.7
0.0117
P6.5 retina
GAGTGGGTCG
(
2
)
6.7
0.0067
P6.5 retina
ATCACAGGCA (
5
)
1.7
0.0017
P6.5 retina
CGCGCACCTC
(
2
)
1.7
0.0017
P6.5 retina
GTGGGTTCCG
(
4
)
1.7
0.0017
P10.5 crx- retina
GTTGGGAGCT
(
3
)
13
0.013
P10.5 crx- retina
ATCACAGGCA (
5
)
5.6
0.0056
P10.5 crx- retina
GGGGGCCCTG (
11
)
3.7
0.0037
P10.5 crx- retina
CAGGGAACTG (
3
)
1.9
0.0019
P10.5 crx+ retina
ATCACAGGCA (
5
)
11.5
0.0115
P10.5 crx+ retina
GAGTGGGTCG
(
2
)
7.7
0.0077
P10.5 crx+ retina
CACTAGGGGC
(
2
)
5.8
0.0058
P10.5 crx+ retina
GTTGGGAGCT
(
3
)
5.8
0.0058
P10.5 crx+ retina
CGCGCACCTC
(
2
)
1.9
0.0019
P10.5 crx+ retina
GGGGCCCTGG
(
11
)
1.9
0.0019
P10.5 crx+ retina
GTGGGTTCCG
(
4
)
1.9
0.0019
Adult retinal
GTTGGGAGCT
(
3
)
25.9
0.0259
Adult retinal
GTGGGTTCCG
(
4
)
7.4
0.0074
Adult retinal
CGCGCACCTC
(
2
)
5.6
0.0056
Adult retinal
CACTAGGGGC
(
2
)
1.9
0.0019
Adult retinal
GAGTGGGTCG
(
2
)
1.9
0.0019
Adult retinal
GGGGCCCTGG
(
11
)
1.9
0.0019
Adult retinal
GGGGGCCCTG (
11
)
1.9
0.0019
ONL
GTTGGGAGCT
(
3
)
7.7
0.0077
ONL
CGCGCACCTC
(
2
)
3.8
0.0038
ONL
GAGTGGGTCG
(
2
)
3.8
0.0038
ONL
CACTAGGGGC
(
2
)
1.9
0.0019
ONL
GCCACACACC (
6
)
1.9
0.0019
ONL
GGGGCACTGG (
6
)
1.9
0.0019
