Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.249555	Col3a1	procollagen, type III, alpha 1	1	1 25.0 cM	12825
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | phosphate transport
Human Homolog	COL3A1[collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 44 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTTCATCTT (2) 4.9 0.0049 P8 Cb GC TTTGGTTTGG (2) 3.3 0.0033 P8 Cb GC CCACAGGATC 1.6 0.0016 P8 Cb GC TGTTCTTTTT (4) 1.6 0.0016 Cb medulloblastoma TAAAATATGT (3) 2.3 0.0023 Cb medulloblastoma TGGTTTTTGT 2.3 0.0023 Cb medulloblastoma TTTGGTTTGG (2) 2.3 0.0023 P8 GC+1d culture TGTTCATCTT (2) 21.7 0.0217 P8 GC+1d culture TTTGGTTTGG (2) 3.4 0.0034 P8 GC+1d culture TGTCTTTAAA (2) 2.3 0.0023 P8 GC+1d culture CCACAGGATC 1.1 0.0011 P8 GC+1d culture TGGTTTTTGT 1.1 0.0011 P8 GC+SHH+1d culture TGTTCATCTT (2) 10.5 0.0105 P8 GC+SHH+1d culture TTTGGTTTGG (2) 2.3 0.0023 P8 GC+SHH+1d culture GGGCAAGGGT 1.2 0.0012 3T3 fibroblasts TGTTCATCTT (2) 38.6 0.0386 3T3 fibroblasts CCACAGGATC 7 0.007 3T3 fibroblasts TGGTTTTTGT 3.5 0.0035 E15 cortex TGGTTTTTGT 9.9 0.0099 Hypothalamus TTTGGTTTGG (2) 3.6 0.0036 Hypothalamus GGGCAAGGGT 1.8 0.0018 E12.5 retina TGTTCTTTTT (4) 3.8 0.0038 E14.5 retina TGGTTTTTGT 36.4 0.0364 E14.5 retina GGGCAAGGGT 1.8 0.0018 E14.5 retina TAAAATATGT (3) 1.8 0.0018 E14.5 retina TGTCTTTAAA (2) 1.8 0.0018 E14.5 retina TTTGGTTTGG (2) 1.8 0.0018 E16.5 retina TAAAATATGT (3) 1.8 0.0018 E16.5 retina TGGTTTTTGT 1.8 0.0018 E16.5 retina TGTTCTTTTT (4) 1.8 0.0018 E16.5 retina TTTGGTTTGG (2) 1.8 0.0018 P0.5 retina TAAAATATGT (3) 2 0.002 P2.5 retina TAAAATATGT (3) 1.8 0.0018 P2.5 retina TGGTTTTTGT 1.8 0.0018 P2.5 retina TGTCTTTAAA (2) 1.8 0.0018 P2.5 retina TGTTCTTTTT (4) 1.8 0.0018 P4.5 retina TGGTTTTTGT 2 0.002 P4.5 retina TGTCTTTAAA (2) 2 0.002 P6.5 retina GGGCAAGGGT 1.7 0.0017 P6.5 retina TGTTCTTTTT (4) 1.7 0.0017 P6.5 retina TTTGGTTTGG (2) 1.7 0.0017 P10.5 crx+ retina TTTGGTTTGG (2) 1.9 0.0019 Adult retinal TGGTTTTTGT 1.9 0.0019 ONL TGGTTTTTGT 5.7 0.0057