Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.249555	Col3a1	procollagen, type III, alpha 1	1	1 25.0 cM	12825
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | phosphate transport
Human Homolog	COL3A1[collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 221 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATCCTGTGCT CCACAGGATC CTCCTGAGTG GACCTGCTGG (2) GATGTGGTTG GCGCCCAGCC GGCCACAGGG TCCACACCAA TCCTCCTCCT (2) TGGGTTTGGG (2) TGTTCATCTT (2) TGTTCTTTTT (4) TTTGGTTTGG (2) TTTTAAATTT (3) TTTTTTTTTC (3) 47.3 0.0473 Cb medulloblastoma CTACTAAAAA CTTTTGTTTT GCTCAGCTTA GGACCTCCTG TAAAATATGT (3) TCAAATGTGT (3) TGAAAGAGGG (2) TGGTTTTTGT TTTGGTTTGG (2) TTTTTTTTTC (3) 29.9 0.0299 P8 GC+1d culture ATCCTGTGCT CCACAGGATC CTTTTGTTTT GAAACTGGGA GAACTCAAGG GCTCAGCTTA TCCACACCAA TCCACTTGTG TGGACCAGGC (2) TGGTTTTTGT TGTCTTTAAA (2) TGTTCATCTT (2) TTTGGTTTGG (2) TTTTAAATTT (3) 63.7 0.0637 P8 GC+SHH+1d culture ATCCTGTGCT CTCCTGAGTG CTTTTGTTTT GATGTGGCTT (2) GCGCCCAGCC GCTCAGCTTA GGCCACAGGG GGCCTCCTGG (3) GGGCAAGGGT GGGCACGCAG TCCACTTGTG TGGACCAGGC (2) TGTATATAAA TGTTCATCTT (2) TTTGGTTTGG (2) TTTTTTTTTC (3) 68 0.068 3T3 fibroblasts ATCCTGTGCT CCACAGGATC GGACCTCCTG GGCCTCCTGG (3) TGGTTTTTGT TGTTCATCTT (2) 115.7 0.1157 E15 cortex CTTTTGTTTT GATGTGGCTT (2) GATGTGGTTG GCGCCCAGCC GCTCAGCTTA GGACCTCCTG GGCCTCCTGG (3) TGAAAGAGGG (2) TGGTTTTTGT TTTTAAATTT (3) 78.8 0.0788 P1 cortex ATCCTGTGCT CTTTTGTTTT GCTCAGCTTA TTTTTTTTTC (3) 45.4 0.0454 Hypothalamus ACCTCTGGAA CTACTAAAAA CTTTTGTTTT GACCTCCAGG GCTCAGCTTA GGACCTCCTG GGCCTCCTGG (3) GGGCAAGGGT TCCACTTGTG TGTATATAAA TTTGGTTTGG (2) TTTTTTTTTC (3) 28.8 0.0288 E12.5 retina ACCTCTGGAA CTCCTGAGTG GCTCAGCTTA GGCCACAGGG GGCCTCCTGG (3) TCAAATGTGT (3) TCCACACCAA TGTTCTTTTT (4) TTTTAAATTT (3) TTTTTTTTTC (3) 49 0.049 E14.5 retina ACCTCTGGAA CTACTAAAAA CTTTTGTTTT GAAACTGGGA GCTCAGCTTA GGCCACAGGG GGGCAAGGGT TAAAATATGT (3) TCAAATGTGT (3) TCCACTTGTG TGAAAGAGGG (2) TGGTTTTTGT TGTATATAAA TGTCTTTAAA (2) TTTGGTTTGG (2) TTTTAAATTT (3) TTTTTTTTTC (3) 74.4 0.0744 E16.5 retina ACCTCTGGAA CTCCTGAGTG GCGCCCAGCC TAAAATATGT (3) TCCACACCAA TGAAAGAGGG (2) TGGTTTTTGT TGTTCTTTTT (4) TTTGGTTTGG (2) 19.8 0.0198 E18.5 retina ACCTCTGGAA CTTTTGTTTT GATGTGGCTT (2) GCTCAGCTTA GGCACTGGGG (2) GGCCACAGGG TGGGTTTGGG (2) TTTTTTTTTC (3) 27.2 0.0272 P0.5 retina ACCTCTGGAA GAACTCAAGG GCTCAGCTTA GGCCTCCTGG (3) TAAAATATGT (3) TCCACACCAA TGGGTTTGGG (2) TGTATATAAA 37.6 0.0376 P2.5 retina CTCCTGAGTG GAAATGGCTC GACCTCCAGG GATGTGGTTG GCTCAGCTTA GGCCACAGGG GGCCTCCTGG (3) TAAAATATGT (3) TCAAATGTGT (3) TCCACTTGTG TCCTCCTCCT (2) TGAAAGAGGG (2) TGGTTTTTGT TGTCTTTAAA (2) TGTTCTTTTT (4) TTTTAAATTT (3) TTTTTTTTTC (3) 56.7 0.0567 P4.5 retina ATCCTGTGCT CTCCTGAGTG CTTTTGTTTT GCTCAGCTTA GGCCACAGGG GGCCTCCTGG (3) GGGCACGCAG TCAAATGTGT (3) TCCACACCAA TGGTTTTTGT TGTCTTTAAA (2) TTTTTTTTTC (3) 45.7 0.0457 P6.5 retina ACCTCTGGAA ATCCTGTGCT CTCCTGAGTG CTTTTGTTTT GAACTCAAGG GCTCAGCTTA GGCCACAGGG GGGCAAGGGT TCAAATGTGT (3) TCCACACCAA TCCACTTGTG TGTTCTTTTT (4) TTTGGTTTGG (2) 45.1 0.0451 P10.5 crx- retina ATCCTGTGCT CTCCTGAGTG CTTTTGTTTT TCAAATGTGT (3) TCCACACCAA TTTTAAATTT (3) 18.7 0.0187 P10.5 crx+ retina ATCCTGTGCT CTTTTGTTTT GACCTGCTGG (2) GATGTGGCTT (2) GATGTGGTTG GCTCAGCTTA GGCACTGGGG (2) GGCCACAGGG GGGCACGCAG TCAAATGTGT (3) TGGACCAGGC (2) TGGGTTTGGG (2) TTTGGTTTGG (2) 34.3 0.0343 Adult retinal ATCCTGTGCT CTTTTGTTTT GACCTCCAGG GCTCAGCTTA GGCCACAGGG GGCCTCCTGG (3) TCAAATGTGT (3) TCCACTTGTG TGGTTTTTGT 22.6 0.0226 ONL ACCTCTGGAA CTCCTGAGTG CTTTTGTTTT GAAACTGGGA GGCACTGGGG (2) GGCCACAGGG TCAAATGTGT (3) TCCTCCTCCT (2) TGGACCAGGC (2) TGGGTTTGGG (2) TGGTTTTTGT TTTTAAATTT (3) 59.1 0.0591