Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.249555	Col3a1	procollagen, type III, alpha 1	1	1 25.0 cM	12825
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | phosphate transport
Human Homolog	COL3A1[collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 221 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATCCTGTGCT (5) 11.4 0.0114 P8 Cb GC TGTTCATCTT (2) 4.9 0.0049 P8 Cb GC CTCCTGAGTG (3) 3.3 0.0033 P8 Cb GC GCGCCCAGCC (2) 3.3 0.0033 P8 Cb GC GGCCACAGGG (4) 3.3 0.0033 P8 Cb GC TGGGTTTGGG (7) 3.3 0.0033 P8 Cb GC TTTGGTTTGG (5) 3.3 0.0033 P8 Cb GC TTTTAAATTT (9) 3.3 0.0033 P8 Cb GC CCACAGGATC 1.6 0.0016 P8 Cb GC GACCTGCTGG (7) 1.6 0.0016 P8 Cb GC GATGTGGTTG (3) 1.6 0.0016 P8 Cb GC TCCACACCAA (3) 1.6 0.0016 P8 Cb GC TCCTCCTCCT (3) 1.6 0.0016 P8 Cb GC TGTTCTTTTT (4) 1.6 0.0016 P8 Cb GC TTTTTTTTTC (16) 1.6 0.0016 Cb medulloblastoma GCTCAGCTTA (3) 6.9 0.0069 Cb medulloblastoma CTTTTGTTTT (7) 4.6 0.0046 Cb medulloblastoma CTACTAAAAA (2) 2.3 0.0023 Cb medulloblastoma GGACCTCCTG (4) 2.3 0.0023 Cb medulloblastoma TAAAATATGT (4) 2.3 0.0023 Cb medulloblastoma TCAAATGTGT (4) 2.3 0.0023 Cb medulloblastoma TGAAAGAGGG (4) 2.3 0.0023 Cb medulloblastoma TGGTTTTTGT 2.3 0.0023 Cb medulloblastoma TTTGGTTTGG (5) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTC (16) 2.3 0.0023 P8 GC+1d culture TGTTCATCTT (2) 21.7 0.0217 P8 GC+1d culture ATCCTGTGCT (5) 12.6 0.0126 P8 GC+1d culture GCTCAGCTTA (3) 9.1 0.0091 P8 GC+1d culture TCCACACCAA (3) 3.4 0.0034 P8 GC+1d culture TTTGGTTTGG (5) 3.4 0.0034 P8 GC+1d culture CTTTTGTTTT (7) 2.3 0.0023 P8 GC+1d culture TGTCTTTAAA (4) 2.3 0.0023 P8 GC+1d culture TTTTAAATTT (9) 2.3 0.0023 P8 GC+1d culture CCACAGGATC 1.1 0.0011 P8 GC+1d culture GAAACTGGGA (6) 1.1 0.0011 P8 GC+1d culture GAACTCAAGG (3) 1.1 0.0011 P8 GC+1d culture TCCACTTGTG 1.1 0.0011 P8 GC+1d culture TGGACCAGGC (6) 1.1 0.0011 P8 GC+1d culture TGGTTTTTGT 1.1 0.0011 P8 GC+SHH+1d culture ATCCTGTGCT (5) 17.6 0.0176 P8 GC+SHH+1d culture GGCCACAGGG (4) 10.5 0.0105 P8 GC+SHH+1d culture TGTTCATCTT (2) 10.5 0.0105 P8 GC+SHH+1d culture CTTTTGTTTT (7) 9.4 0.0094 P8 GC+SHH+1d culture GCTCAGCTTA (3) 3.5 0.0035 P8 GC+SHH+1d culture CTCCTGAGTG (3) 2.3 0.0023 P8 GC+SHH+1d culture TTTGGTTTGG (5) 2.3 0.0023 P8 GC+SHH+1d culture TTTTTTTTTC (16) 2.3 0.0023 P8 GC+SHH+1d culture GATGTGGCTT (4) 1.2 0.0012 P8 GC+SHH+1d culture GCGCCCAGCC (2) 1.2 0.0012 P8 GC+SHH+1d culture GGCCTCCTGG (7) 1.2 0.0012 P8 GC+SHH+1d culture GGGCAAGGGT (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGCACGCAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TCCACTTGTG 1.2 0.0012 P8 GC+SHH+1d culture TGGACCAGGC (6) 1.2 0.0012 P8 GC+SHH+1d culture TGTATATAAA (2) 1.2 0.0012 3T3 fibroblasts ATCCTGTGCT (5) 59.6 0.0596 3T3 fibroblasts TGTTCATCTT (2) 38.6 0.0386 3T3 fibroblasts CCACAGGATC 7 0.007 3T3 fibroblasts GGACCTCCTG (4) 3.5 0.0035 3T3 fibroblasts GGCCTCCTGG (7) 3.5 0.0035 3T3 fibroblasts TGGTTTTTGT 3.5 0.0035 E15 cortex GGCCTCCTGG (7) 24.7 0.0247 E15 cortex GCTCAGCTTA (3) 9.9 0.0099 E15 cortex TGGTTTTTGT 9.9 0.0099 E15 cortex CTTTTGTTTT (7) 4.9 0.0049 E15 cortex GATGTGGCTT (4) 4.9 0.0049 E15 cortex GATGTGGTTG (3) 4.9 0.0049 E15 cortex GCGCCCAGCC (2) 4.9 0.0049 E15 cortex GGACCTCCTG (4) 4.9 0.0049 E15 cortex TGAAAGAGGG (4) 4.9 0.0049 E15 cortex TTTTAAATTT (9) 4.9 0.0049 P1 cortex GCTCAGCTTA (3) 27.3 0.0273 P1 cortex CTTTTGTTTT (7) 9.1 0.0091 P1 cortex ATCCTGTGCT (5) 4.5 0.0045 P1 cortex TTTTTTTTTC (16) 4.5 0.0045 Hypothalamus CTTTTGTTTT (7) 3.6 0.0036 Hypothalamus GCTCAGCTTA (3) 3.6 0.0036 Hypothalamus TTTGGTTTGG (5) 3.6 0.0036 Hypothalamus TTTTTTTTTC (16) 3.6 0.0036 Hypothalamus ACCTCTGGAA (2) 1.8 0.0018 Hypothalamus CTACTAAAAA (2) 1.8 0.0018 Hypothalamus GACCTCCAGG (3) 1.8 0.0018 Hypothalamus GGACCTCCTG (4) 1.8 0.0018 Hypothalamus GGCCTCCTGG (7) 1.8 0.0018 Hypothalamus GGGCAAGGGT (3) 1.8 0.0018 Hypothalamus TCCACTTGTG 1.8 0.0018 Hypothalamus TGTATATAAA (2) 1.8 0.0018 E12.5 retina GGCCACAGGG (4) 15 0.015 E12.5 retina GCTCAGCTTA (3) 13.1 0.0131 E12.5 retina ACCTCTGGAA (2) 3.8 0.0038 E12.5 retina TGTTCTTTTT (4) 3.8 0.0038 E12.5 retina TTTTAAATTT (9) 3.8 0.0038 E12.5 retina CTCCTGAGTG (3) 1.9 0.0019 E12.5 retina GGCCTCCTGG (7) 1.9 0.0019 E12.5 retina TCAAATGTGT (4) 1.9 0.0019 E12.5 retina TCCACACCAA (3) 1.9 0.0019 E12.5 retina TTTTTTTTTC (16) 1.9 0.0019 E14.5 retina TGGTTTTTGT 36.4 0.0364 E14.5 retina ACCTCTGGAA (2) 5.5 0.0055 E14.5 retina TTTTAAATTT (9) 5.5 0.0055 E14.5 retina TTTTTTTTTC (16) 3.6 0.0036 E14.5 retina CTACTAAAAA (2) 1.8 0.0018 E14.5 retina CTTTTGTTTT (7) 1.8 0.0018 E14.5 retina GAAACTGGGA (6) 1.8 0.0018 E14.5 retina GCTCAGCTTA (3) 1.8 0.0018 E14.5 retina GGCCACAGGG (4) 1.8 0.0018 E14.5 retina GGGCAAGGGT (3) 1.8 0.0018 E14.5 retina TAAAATATGT (4) 1.8 0.0018 E14.5 retina TCAAATGTGT (4) 1.8 0.0018 E14.5 retina TCCACTTGTG 1.8 0.0018 E14.5 retina TGAAAGAGGG (4) 1.8 0.0018 E14.5 retina TGTATATAAA (2) 1.8 0.0018 E14.5 retina TGTCTTTAAA (4) 1.8 0.0018 E14.5 retina TTTGGTTTGG (5) 1.8 0.0018 E16.5 retina CTCCTGAGTG (3) 3.6 0.0036 E16.5 retina TCCACACCAA (3) 3.6 0.0036 E16.5 retina ACCTCTGGAA (2) 1.8 0.0018 E16.5 retina GCGCCCAGCC (2) 1.8 0.0018 E16.5 retina TAAAATATGT (4) 1.8 0.0018 E16.5 retina TGAAAGAGGG (4) 1.8 0.0018 E16.5 retina TGGTTTTTGT 1.8 0.0018 E16.5 retina TGTTCTTTTT (4) 1.8 0.0018 E16.5 retina TTTGGTTTGG (5) 1.8 0.0018 E18.5 retina GGCCACAGGG (4) 7.3 0.0073 E18.5 retina TTTTTTTTTC (16) 5.5 0.0055 E18.5 retina GGCACTGGGG (7) 3.6 0.0036 E18.5 retina TGGGTTTGGG (7) 3.6 0.0036 E18.5 retina ACCTCTGGAA (2) 1.8 0.0018 E18.5 retina CTTTTGTTTT (7) 1.8 0.0018 E18.5 retina GATGTGGCTT (4) 1.8 0.0018 E18.5 retina GCTCAGCTTA (3) 1.8 0.0018 P0.5 retina GCTCAGCTTA (3) 23.6 0.0236 P0.5 retina ACCTCTGGAA (2) 2 0.002 P0.5 retina GAACTCAAGG (3) 2 0.002 P0.5 retina GGCCTCCTGG (7) 2 0.002 P0.5 retina TAAAATATGT (4) 2 0.002 P0.5 retina TCCACACCAA (3) 2 0.002 P0.5 retina TGGGTTTGGG (7) 2 0.002 P0.5 retina TGTATATAAA (2) 2 0.002 P2.5 retina GGCCACAGGG (4) 12.3 0.0123 P2.5 retina GCTCAGCTTA (3) 7 0.007 P2.5 retina CTCCTGAGTG (3) 5.3 0.0053 P2.5 retina GAAATGGCTC (2) 5.3 0.0053 P2.5 retina GGCCTCCTGG (7) 3.5 0.0035 P2.5 retina TCCACTTGTG 3.5 0.0035 P2.5 retina GACCTCCAGG (3) 1.8 0.0018 P2.5 retina GATGTGGTTG (3) 1.8 0.0018 P2.5 retina TAAAATATGT (4) 1.8 0.0018 P2.5 retina TCAAATGTGT (4) 1.8 0.0018 P2.5 retina TCCTCCTCCT (3) 1.8 0.0018 P2.5 retina TGAAAGAGGG (4) 1.8 0.0018 P2.5 retina TGGTTTTTGT 1.8 0.0018 P2.5 retina TGTCTTTAAA (4) 1.8 0.0018 P2.5 retina TGTTCTTTTT (4) 1.8 0.0018 P2.5 retina TTTTAAATTT (9) 1.8 0.0018 P2.5 retina TTTTTTTTTC (16) 1.8 0.0018 P4.5 retina GGCCACAGGG (4) 7.9 0.0079 P4.5 retina CTCCTGAGTG (3) 5.9 0.0059 P4.5 retina GCTCAGCTTA (3) 5.9 0.0059 P4.5 retina CTTTTGTTTT (7) 4 0.004 P4.5 retina GGCCTCCTGG (7) 4 0.004 P4.5 retina TCAAATGTGT (4) 4 0.004 P4.5 retina TCCACACCAA (3) 4 0.004 P4.5 retina ATCCTGTGCT (5) 2 0.002 P4.5 retina GGGCACGCAG (4) 2 0.002 P4.5 retina TGGTTTTTGT 2 0.002 P4.5 retina TGTCTTTAAA (4) 2 0.002 P4.5 retina TTTTTTTTTC (16) 2 0.002 P6.5 retina GCTCAGCTTA (3) 8.3 0.0083 P6.5 retina CTTTTGTTTT (7) 6.7 0.0067 P6.5 retina TCCACACCAA (3) 6.7 0.0067 P6.5 retina ATCCTGTGCT (5) 3.3 0.0033 P6.5 retina CTCCTGAGTG (3) 3.3 0.0033 P6.5 retina GGCCACAGGG (4) 3.3 0.0033 P6.5 retina TCAAATGTGT (4) 3.3 0.0033 P6.5 retina ACCTCTGGAA (2) 1.7 0.0017 P6.5 retina GAACTCAAGG (3) 1.7 0.0017 P6.5 retina GGGCAAGGGT (3) 1.7 0.0017 P6.5 retina TCCACTTGTG 1.7 0.0017 P6.5 retina TGTTCTTTTT (4) 1.7 0.0017 P6.5 retina TTTGGTTTGG (5) 1.7 0.0017 P10.5 crx- retina TCAAATGTGT (4) 5.6 0.0056 P10.5 crx- retina ATCCTGTGCT (5) 3.7 0.0037 P10.5 crx- retina CTTTTGTTTT (7) 3.7 0.0037 P10.5 crx- retina CTCCTGAGTG (3) 1.9 0.0019 P10.5 crx- retina TCCACACCAA (3) 1.9 0.0019 P10.5 crx- retina TTTTAAATTT (9) 1.9 0.0019 P10.5 crx+ retina TCAAATGTGT (4) 7.7 0.0077 P10.5 crx+ retina ATCCTGTGCT (5) 3.8 0.0038 P10.5 crx+ retina CTTTTGTTTT (7) 3.8 0.0038 P10.5 crx+ retina GACCTGCTGG (7) 1.9 0.0019 P10.5 crx+ retina GATGTGGCTT (4) 1.9 0.0019 P10.5 crx+ retina GATGTGGTTG (3) 1.9 0.0019 P10.5 crx+ retina GCTCAGCTTA (3) 1.9 0.0019 P10.5 crx+ retina GGCACTGGGG (7) 1.9 0.0019 P10.5 crx+ retina GGCCACAGGG (4) 1.9 0.0019 P10.5 crx+ retina GGGCACGCAG (4) 1.9 0.0019 P10.5 crx+ retina TGGACCAGGC (6) 1.9 0.0019 P10.5 crx+ retina TGGGTTTGGG (7) 1.9 0.0019 P10.5 crx+ retina TTTGGTTTGG (5) 1.9 0.0019 Adult retinal GCTCAGCTTA (3) 5.6 0.0056 Adult retinal GGCCTCCTGG (7) 3.7 0.0037 Adult retinal ATCCTGTGCT (5) 1.9 0.0019 Adult retinal CTTTTGTTTT (7) 1.9 0.0019 Adult retinal GACCTCCAGG (3) 1.9 0.0019 Adult retinal GGCCACAGGG (4) 1.9 0.0019 Adult retinal TCAAATGTGT (4) 1.9 0.0019 Adult retinal TCCACTTGTG 1.9 0.0019 Adult retinal TGGTTTTTGT 1.9 0.0019 ONL ACCTCTGGAA (2) 17.2 0.0172 ONL GGCCACAGGG (4) 9.6 0.0096 ONL GAAACTGGGA (6) 5.7 0.0057 ONL TGGTTTTTGT 5.7 0.0057 ONL CTTTTGTTTT (7) 3.8 0.0038 ONL GGCACTGGGG (7) 3.8 0.0038 ONL TGGACCAGGC (6) 3.8 0.0038 ONL CTCCTGAGTG (3) 1.9 0.0019 ONL TCAAATGTGT (4) 1.9 0.0019 ONL TCCTCCTCCT (3) 1.9 0.0019 ONL TGGGTTTGGG (7) 1.9 0.0019 ONL TTTTAAATTT (9) 1.9 0.0019