Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.250419	Ccni	cyclin I	5	5 E3.3-F1.3	12453
Gene Ontology	cyclin-dependent protein kinase regulator activity | regulation of cell cycle
Human Homolog	CCNI[cyclin I]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 3 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 180 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC TACTGCTGAT (3) 45.7 0.0457 P8 Cb GC TCAAAAAAAA (60) 17.9 0.0179 P8 Cb GC TTTCTTTGGT (3) 9.8 0.0098 P8 Cb GC AATCAGTGGC (3) 8.2 0.0082 P8 Cb GC TTTGTAATAT (5) 6.5 0.0065 P8 Cb GC GTCAAAAAAA (15) 4.9 0.0049 P8 Cb GC TGCTTTATCA (3) 4.9 0.0049 P8 Cb GC AAGTTTCCAG (4) 3.3 0.0033 P8 Cb GC ATAGAGAAGG 3.3 0.0033 P8 Cb GC GAAAATGTGA (5) 1.6 0.0016 P8 Cb GC GTTCTGACTG (7) 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma TCAAAAAAAA (60) 99.4 0.0994 Cb medulloblastoma TACTGCTGAT (3) 41.6 0.0416 Cb medulloblastoma GTCAAAAAAA (15) 6.9 0.0069 Cb medulloblastoma AATCAGTGGC (3) 4.6 0.0046 Cb medulloblastoma TGCTTTATCA (3) 4.6 0.0046 Cb medulloblastoma TTTCTTTGGT (3) 4.6 0.0046 Cb medulloblastoma TTTGTAATAT (5) 2.3 0.0023 P8 GC+1d culture TACTGCTGAT (3) 71.9 0.0719 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture TCAAAAAAAA (60) 17.1 0.0171 P8 GC+1d culture GTCAAAAAAA (15) 12.6 0.0126 P8 GC+1d culture TTTCTTTGGT (3) 4.6 0.0046 P8 GC+1d culture AATCAGTGGC (3) 2.3 0.0023 P8 GC+1d culture GTTCTGACTG (7) 2.3 0.0023 P8 GC+1d culture TCACAAAAAA (3) 2.3 0.0023 P8 GC+1d culture GAAGCCCAGA (4) 1.1 0.0011 P8 GC+1d culture GGGAACCCCT (9) 1.1 0.0011 P8 GC+1d culture TTTGTAATAT (5) 1.1 0.0011 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture TACTGCTGAT (3) 72.6 0.0726 P8 GC+SHH+1d culture TCAAAAAAAA (60) 51.5 0.0515 P8 GC+SHH+1d culture GTCAAAAAAA (15) 15.2 0.0152 P8 GC+SHH+1d culture TTTCTTTGGT (3) 7 0.007 P8 GC+SHH+1d culture TTTGTAATAT (5) 5.9 0.0059 P8 GC+SHH+1d culture GTTCTGACTG (7) 3.5 0.0035 P8 GC+SHH+1d culture TATGTAATAT (5) 3.5 0.0035 P8 GC+SHH+1d culture TGCTTTATCA (3) 3.5 0.0035 P8 GC+SHH+1d culture AATCAGTGGC (3) 1.2 0.0012 P8 GC+SHH+1d culture GAAGCCCAGA (4) 1.2 0.0012 3T3 fibroblasts TCAAAAAAAA (60) 7 0.007 3T3 fibroblasts AAGTTTCCAG (4) 3.5 0.0035 3T3 fibroblasts AATCAGTGGC (3) 3.5 0.0035 3T3 fibroblasts TGCTTTATCA (3) 3.5 0.0035 3T3 fibroblasts TGGTGCTGGG (6) 3.5 0.0035 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex GTCAAAAAAA (15) 24.7 0.0247 E15 cortex TCAAAAAAAA (60) 14.8 0.0148 E15 cortex TACTGCTGAT (3) 9.9 0.0099 E15 cortex TGCTTTATCA (3) 9.9 0.0099 E15 cortex TCACAAAAAA (3) 4.9 0.0049 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex GTCAAAAAAA (15) 22.7 0.0227 P1 cortex TCAAAAAAAA (60) 22.7 0.0227 P1 cortex GGGAACCCCT (9) 9.1 0.0091 P1 cortex TACTGCTGAT (3) 9.1 0.0091 P1 cortex TTTCTTTGGT (3) 9.1 0.0091 P1 cortex TGCTTTATCA (3) 4.5 0.0045 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus TCAAAAAAAA (60) 39.8 0.0398 Hypothalamus TACTGCTGAT (3) 23.5 0.0235 Hypothalamus GTCAAAAAAA (15) 5.4 0.0054 Hypothalamus ATAGAGAAGG 1.8 0.0018 Hypothalamus GAAAATGTGA (5) 1.8 0.0018 Hypothalamus GTTCTGACTG (7) 1.8 0.0018 Hypothalamus TCACAAAAAA (3) 1.8 0.0018 Hypothalamus TTTCTTTGGT (3) 1.8 0.0018 Hypothalamus TTTGTAATAT (5) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina TACTGCTGAT (3) 30 0.03 E12.5 retina TCAAAAAAAA (60) 18.8 0.0188 E12.5 retina AATCAGTGGC (3) 7.5 0.0075 E12.5 retina TGCTTTATCA (3) 3.8 0.0038 E12.5 retina ATAGAGAAGG 1.9 0.0019 E12.5 retina GAAGCCCAGA (4) 1.9 0.0019 E12.5 retina GGGAACCCCT (9) 1.9 0.0019 E12.5 retina GTATCCCTTT 1.9 0.0019 E12.5 retina GTCAAAAAAA (15) 1.9 0.0019 E14.5 retina TCAAAAAAAA (60) 41.9 0.0419 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina TACTGCTGAT (3) 21.9 0.0219 E14.5 retina GTCAAAAAAA (15) 10.9 0.0109 E14.5 retina GTTCTGACTG (7) 3.6 0.0036 E14.5 retina TGGTGCTGGG (6) 3.6 0.0036 E14.5 retina GAAAATGTGA (5) 1.8 0.0018 E14.5 retina GGGAACCCCT (9) 1.8 0.0018 E14.5 retina TCACAAAAAA (3) 1.8 0.0018 E14.5 retina TGCTTTATCA (3) 1.8 0.0018 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina TACTGCTGAT (3) 19.9 0.0199 E16.5 retina TCAAAAAAAA (60) 18.1 0.0181 E16.5 retina GTCAAAAAAA (15) 10.9 0.0109 E16.5 retina GGGAACCCCT (9) 5.4 0.0054 E16.5 retina TGCTTTATCA (3) 3.6 0.0036 E16.5 retina TGGTGCTGGG (6) 3.6 0.0036 E16.5 retina TTTCTTTGGT (3) 3.6 0.0036 E16.5 retina AATCAGTGGC (3) 1.8 0.0018 E16.5 retina ATAGAGAAGG 1.8 0.0018 E16.5 retina TCACAAAAAA (3) 1.8 0.0018 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina TCAAAAAAAA (60) 49.1 0.0491 E18.5 retina TACTGCTGAT (3) 45.5 0.0455 E18.5 retina GTCAAAAAAA (15) 30.9 0.0309 E18.5 retina GGGAACCCCT (9) 3.6 0.0036 E18.5 retina TGGTGCTGGG (6) 3.6 0.0036 E18.5 retina AATCAGTGGC (3) 1.8 0.0018 E18.5 retina TCACAAAAAA (3) 1.8 0.0018 E18.5 retina TTTCTTTGGT (3) 1.8 0.0018 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina TCAAAAAAAA (60) 31.4 0.0314 P0.5 retina TACTGCTGAT (3) 23.6 0.0236 P0.5 retina GGGAACCCCT (9) 11.8 0.0118 P0.5 retina GTCAAAAAAA (15) 7.9 0.0079 P0.5 retina GAAGCCCAGA (4) 3.9 0.0039 P0.5 retina TGCTTTATCA (3) 3.9 0.0039 P0.5 retina TTTCTTTGGT (3) 3.9 0.0039 P0.5 retina GTATCCCTTT 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina TCAAAAAAAA (60) 35.2 0.0352 P2.5 retina TACTGCTGAT (3) 24.6 0.0246 P2.5 retina GTCAAAAAAA (15) 10.6 0.0106 P2.5 retina TTTGTAATAT (5) 7 0.007 P2.5 retina GGGAACCCCT (9) 3.5 0.0035 P2.5 retina ATAGAGAAGG 1.8 0.0018 P2.5 retina TGCTTTATCA (3) 1.8 0.0018 P2.5 retina TTTCTTTGGT (3) 1.8 0.0018 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina TACTGCTGAT (3) 51.5 0.0515 P4.5 retina TCAAAAAAAA (60) 37.6 0.0376 P4.5 retina TTTGTAATAT (5) 5.9 0.0059 P4.5 retina GGGAACCCCT (9) 4 0.004 P4.5 retina GTCAAAAAAA (15) 2 0.002 P4.5 retina TGGTGCTGGG (6) 2 0.002 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina TCAAAAAAAA (60) 31.7 0.0317 P6.5 retina TACTGCTGAT (3) 23.3 0.0233 P6.5 retina GTCAAAAAAA (15) 10 0.01 P6.5 retina TGCTTTATCA (3) 3.3 0.0033 P6.5 retina TTTCTTTGGT (3) 3.3 0.0033 P6.5 retina TTTGTAATAT (5) 3.3 0.0033 P6.5 retina AATCAGTGGC (3) 1.7 0.0017 P6.5 retina GTTCTGACTG (7) 1.7 0.0017 P10.5 crx- retina TACTGCTGAT (3) 29.7 0.0297 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina TCAAAAAAAA (60) 14.9 0.0149 P10.5 crx- retina GTCAAAAAAA (15) 3.7 0.0037 P10.5 crx- retina TATGTAATAT (5) 3.7 0.0037 P10.5 crx- retina AAGTTTCCAG (4) 1.9 0.0019 P10.5 crx- retina ATAGAGAAGG 1.9 0.0019 P10.5 crx- retina GTTCTGACTG (7) 1.9 0.0019 P10.5 crx- retina TCACAAAAAA (3) 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina TACTGCTGAT (3) 17.3 0.0173 P10.5 crx+ retina TCAAAAAAAA (60) 17.3 0.0173 P10.5 crx+ retina AATCAGTGGC (3) 9.6 0.0096 P10.5 crx+ retina GTCAAAAAAA (15) 5.8 0.0058 P10.5 crx+ retina TTTCTTTGGT (3) 3.8 0.0038 P10.5 crx+ retina GGGAACCCCT (9) 1.9 0.0019 P10.5 crx+ retina GTATCCCTTT 1.9 0.0019 P10.5 crx+ retina TTTGTAATAT (5) 1.9 0.0019 Adult retinal TCAAAAAAAA (60) 20.4 0.0204 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal TACTGCTGAT (3) 13 0.013 Adult retinal GTCAAAAAAA (15) 7.4 0.0074 Adult retinal GGGAACCCCT (9) 1.9 0.0019 Adult retinal TGCTTTATCA (3) 1.9 0.0019 Adult retinal TGGTGCTGGG (6) 1.9 0.0019 Adult retinal TTTCTTTGGT (3) 1.9 0.0019 Adult retinal TTTGTAATAT (5) 1.9 0.0019 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL TCAAAAAAAA (60) 15.3 0.0153 ONL TACTGCTGAT (3) 11.5 0.0115 ONL GAAAATGTGA (5) 3.8 0.0038 ONL TGGTGCTGGG (6) 3.8 0.0038 ONL AATCAGTGGC (3) 1.9 0.0019 ONL ATAGAGAAGG 1.9 0.0019 ONL GTCAAAAAAA (15) 1.9 0.0019 ONL TTTGTAATAT (5) 1.9 0.0019