Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.262053	C76213	expressed sequence C76213	4		97124
Mm.262053	Vcp	valosin containing protein	4	4 23.0 cM	269523
Gene Ontology	ATP binding | cell growth and/or maintenance | endoplasmic reticulum | Golgi apparatus | hydrolase activity | lipid binding | nucleotide binding | nucleus | protein binding | transport
Human Homolog	VCP[valosin-containing protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 95 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGTAAAAGG (3) 16.3 0.0163 P8 Cb GC GCCTGTTCCA (3) 14.7 0.0147 P8 Cb GC CTTTTGAGTT (3) 8.2 0.0082 P8 Cb GC TCCCGGGAAT (2) 3.3 0.0033 P8 Cb GC CAGCGAGCTG (3) 1.6 0.0016 P8 Cb GC GCCTCTGGAG (3) 1.6 0.0016 Cb medulloblastoma GCCTGTTCCA (3) 9.2 0.0092 Cb medulloblastoma TTGTAAAAGG (3) 9.2 0.0092 Cb medulloblastoma CTTTTGAGTT (3) 6.9 0.0069 Cb medulloblastoma GCCTCTGGAG (3) 2.3 0.0023 Cb medulloblastoma TCTACAAAAA (3) 2.3 0.0023 P8 GC+1d culture TTGTAAAAGG (3) 20.5 0.0205 P8 GC+1d culture GCCTGTTCCA (3) 16 0.016 P8 GC+1d culture CTTTTGAGTT (3) 6.8 0.0068 P8 GC+1d culture TCCCGGGAAT (2) 1.1 0.0011 P8 GC+SHH+1d culture TTGTAAAAGG (3) 31.6 0.0316 P8 GC+SHH+1d culture GCCTGTTCCA (3) 16.4 0.0164 P8 GC+SHH+1d culture CTTTTGAGTT (3) 8.2 0.0082 P8 GC+SHH+1d culture CAGCGAGCTG (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGTAAACTC (2) 1.2 0.0012 P8 GC+SHH+1d culture TCCCGGGAAT (2) 1.2 0.0012 P8 GC+SHH+1d culture TGATAGTTAT (3) 1.2 0.0012 3T3 fibroblasts GCCTGTTCCA (3) 14 0.014 3T3 fibroblasts GTGGCACATC (3) 3.5 0.0035 E15 cortex CAGCGAGCTG (3) 14.8 0.0148 E15 cortex GCCTGTTCCA (3) 9.9 0.0099 E15 cortex GCCTCTGGAG (3) 4.9 0.0049 E15 cortex TTGTAAAAGG (3) 4.9 0.0049 P1 cortex TTGTAAAAGG (3) 22.7 0.0227 P1 cortex CTGTAAACTC (2) 4.5 0.0045 Hypothalamus TGGTTGGGGA (3) 70.6 0.0706 Hypothalamus TTGTAAAAGG (3) 16.3 0.0163 Hypothalamus CTTTTGAGTT (3) 5.4 0.0054 Hypothalamus GCCTGTTCCA (3) 5.4 0.0054 Hypothalamus CAGCGAGCTG (3) 1.8 0.0018 Hypothalamus TCTACAAAAA (3) 1.8 0.0018 E12.5 retina GCCTGTTCCA (3) 35.7 0.0357 E12.5 retina TTGTAAAAGG (3) 18.8 0.0188 E12.5 retina CTTTTGAGTT (3) 7.5 0.0075 E12.5 retina GTGGCACATC (3) 3.8 0.0038 E14.5 retina GCCTGTTCCA (3) 20 0.02 E14.5 retina TTGTAAAAGG (3) 18.2 0.0182 E14.5 retina CTTTTGAGTT (3) 3.6 0.0036 E14.5 retina CAGCGAGCTG (3) 1.8 0.0018 E14.5 retina CTGGCACATC (2) 1.8 0.0018 E14.5 retina TGATAGTTAT (3) 1.8 0.0018 E14.5 retina TGGTTTGGGG (3) 1.8 0.0018 E16.5 retina GCCTGTTCCA (3) 7.2 0.0072 E16.5 retina TTGTAAAAGG (3) 7.2 0.0072 E16.5 retina CAGCGAGCTG (3) 1.8 0.0018 E16.5 retina CTGGCACATC (2) 1.8 0.0018 E16.5 retina CTTTTGAGTT (3) 1.8 0.0018 E16.5 retina TCTACAAAAA (3) 1.8 0.0018 E16.5 retina TGGTTTGGGG (3) 1.8 0.0018 E18.5 retina TTGTAAAAGG (3) 20 0.02 E18.5 retina GCCTGTTCCA (3) 3.6 0.0036 E18.5 retina CTGGCACATC (2) 1.8 0.0018 E18.5 retina CTGTAAACTC (2) 1.8 0.0018 E18.5 retina CTTTTGAGTT (3) 1.8 0.0018 E18.5 retina TGGTTGGGGA (3) 1.8 0.0018 P0.5 retina TTGTAAAAGG (3) 13.7 0.0137 P0.5 retina GCCTGTTCCA (3) 9.8 0.0098 P0.5 retina GCCTCTGGAG (3) 3.9 0.0039 P0.5 retina CAGCGAGCTG (3) 2 0.002 P0.5 retina CTTTTGAGTT (3) 2 0.002 P0.5 retina TCCCGGGAAT (2) 2 0.002 P2.5 retina TTGTAAAAGG (3) 15.8 0.0158 P2.5 retina GCCTGTTCCA (3) 14.1 0.0141 P2.5 retina CTGGCACATC (2) 1.8 0.0018 P2.5 retina CTTTTGAGTT (3) 1.8 0.0018 P2.5 retina TCTACAAAAA (3) 1.8 0.0018 P2.5 retina TGGTTGGGGA (3) 1.8 0.0018 P4.5 retina TTGTAAAAGG (3) 35.7 0.0357 P4.5 retina GCCTGTTCCA (3) 21.8 0.0218 P4.5 retina CTTTTGAGTT (3) 5.9 0.0059 P4.5 retina CTGTAAACTC (2) 2 0.002 P6.5 retina GCCTGTTCCA (3) 13.3 0.0133 P6.5 retina CTTTTGAGTT (3) 6.7 0.0067 P6.5 retina TTGTAAAAGG (3) 5 0.005 P10.5 crx- retina TTGTAAAAGG (3) 22.3 0.0223 P10.5 crx- retina GCCTGTTCCA (3) 11.1 0.0111 P10.5 crx- retina CTTTTGAGTT (3) 9.3 0.0093 P10.5 crx+ retina GCCTGTTCCA (3) 25 0.025 P10.5 crx+ retina TTGTAAAAGG (3) 11.5 0.0115 P10.5 crx+ retina CTTTTGAGTT (3) 3.8 0.0038 P10.5 crx+ retina TGATAGTTAT (3) 1.9 0.0019 Adult retinal TTGTAAAAGG (3) 7.4 0.0074 Adult retinal AACAGGCAGT (2) 5.6 0.0056 Adult retinal GCCTGTTCCA (3) 5.6 0.0056 Adult retinal CTTTTGAGTT (3) 1.9 0.0019 Adult retinal TCTACAAAAA (3) 1.9 0.0019 ONL CTTTTGAGTT (3) 11.5 0.0115 ONL GCCTGTTCCA (3) 11.5 0.0115 ONL TTGTAAAAGG (3) 9.6 0.0096 ONL CTGTAAACTC (2) 3.8 0.0038