Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.262053	C76213	expressed sequence C76213	4		97124
Mm.262053	Vcp	valosin containing protein	4	4 23.0 cM	269523
Gene Ontology	ATP binding | cell growth and/or maintenance | endoplasmic reticulum | Golgi apparatus | hydrolase activity | lipid binding | nucleotide binding | nucleus | protein binding | transport
Human Homolog	VCP[valosin-containing protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 236 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTCTGGTG (11) 24.5 0.0245 P8 Cb GC TTGTAAAAGG (4) 16.3 0.0163 P8 Cb GC GCCTGTTCCA (5) 14.7 0.0147 P8 Cb GC CTTTTGAGTT (6) 8.2 0.0082 P8 Cb GC GGGAGTGGGG (3) 8.2 0.0082 P8 Cb GC TAAAATAAAA (14) 8.2 0.0082 P8 Cb GC GTGGCACACA (30) 6.5 0.0065 P8 Cb GC GCCCTCTGGG (7) 3.3 0.0033 P8 Cb GC TCCCGGGAAT (3) 3.3 0.0033 P8 Cb GC CAGCGAGCTG (3) 1.6 0.0016 P8 Cb GC CAGGCACATC (3) 1.6 0.0016 P8 Cb GC GCCTATGGAC (3) 1.6 0.0016 P8 Cb GC GCCTCTGCAG (7) 1.6 0.0016 P8 Cb GC GCCTCTGGAG (9) 1.6 0.0016 P8 Cb GC GCTTCTGGAG (4) 1.6 0.0016 Cb medulloblastoma TAAAATAAAA (14) 18.5 0.0185 Cb medulloblastoma GCCTCTGGTG (11) 16.2 0.0162 Cb medulloblastoma GTGGCACACA (30) 11.6 0.0116 Cb medulloblastoma GCCTGTTCCA (5) 9.2 0.0092 Cb medulloblastoma TTGTAAAAGG (4) 9.2 0.0092 Cb medulloblastoma CTTTTGAGTT (6) 6.9 0.0069 Cb medulloblastoma GCCACCACCA (9) 4.6 0.0046 Cb medulloblastoma GCCTATGGAC (3) 4.6 0.0046 Cb medulloblastoma GCCCTCTGGG (7) 2.3 0.0023 Cb medulloblastoma GCCTCTGGAG (9) 2.3 0.0023 Cb medulloblastoma GCTTCTGGAG (4) 2.3 0.0023 Cb medulloblastoma GGGAGTGGGG (3) 2.3 0.0023 Cb medulloblastoma GTGATAGTTA (3) 2.3 0.0023 Cb medulloblastoma TCTACAAAAA (6) 2.3 0.0023 P8 GC+1d culture GCCTCTGGTG (11) 22.8 0.0228 P8 GC+1d culture TTGTAAAAGG (4) 20.5 0.0205 P8 GC+1d culture GCCTGTTCCA (5) 16 0.016 P8 GC+1d culture GTGGCACACA (30) 13.7 0.0137 P8 GC+1d culture TAAAATAAAA (14) 12.6 0.0126 P8 GC+1d culture CTTTTGAGTT (6) 6.8 0.0068 P8 GC+1d culture CGGGAAAGCA (5) 3.4 0.0034 P8 GC+1d culture GGGAGTGGGG (3) 3.4 0.0034 P8 GC+1d culture CAGGCACATC (3) 2.3 0.0023 P8 GC+1d culture GCCTATGGAC (3) 2.3 0.0023 P8 GC+1d culture AAGGATTTAA (3) 1.1 0.0011 P8 GC+1d culture GTTTCTGGAG (4) 1.1 0.0011 P8 GC+1d culture TCCCGGGAAT (3) 1.1 0.0011 P8 GC+1d culture TCTTTTTTTT (12) 1.1 0.0011 P8 GC+1d culture TGCGAGCAGA (4) 1.1 0.0011 P8 GC+SHH+1d culture TTGTAAAAGG (4) 31.6 0.0316 P8 GC+SHH+1d culture GCCTCTGGTG (11) 26.9 0.0269 P8 GC+SHH+1d culture GCCTGTTCCA (5) 16.4 0.0164 P8 GC+SHH+1d culture CTTTTGAGTT (6) 8.2 0.0082 P8 GC+SHH+1d culture TAAAATAAAA (14) 8.2 0.0082 P8 GC+SHH+1d culture GGGAGTGGGG (3) 4.7 0.0047 P8 GC+SHH+1d culture GTGGCACACA (30) 2.3 0.0023 P8 GC+SHH+1d culture GTTTCTGGAG (4) 2.3 0.0023 P8 GC+SHH+1d culture CAGCGAGCTG (3) 1.2 0.0012 P8 GC+SHH+1d culture CAGGCACATC (3) 1.2 0.0012 P8 GC+SHH+1d culture CGGGAAAGCA (5) 1.2 0.0012 P8 GC+SHH+1d culture CTGTAAACTC (2) 1.2 0.0012 P8 GC+SHH+1d culture GCCTCTGCAG (7) 1.2 0.0012 P8 GC+SHH+1d culture TCCCGGGAAT (3) 1.2 0.0012 P8 GC+SHH+1d culture TGATAGTTAT (3) 1.2 0.0012 P8 GC+SHH+1d culture TGCGAGCAGA (4) 1.2 0.0012 3T3 fibroblasts GCCTCTGGTG (11) 31.5 0.0315 3T3 fibroblasts GCCTGTTCCA (5) 14 0.014 3T3 fibroblasts GTGGCACACA (30) 14 0.014 3T3 fibroblasts CAGGCACATC (3) 7 0.007 3T3 fibroblasts GCCCTCTGGG (7) 3.5 0.0035 3T3 fibroblasts GCCTCTGCAG (7) 3.5 0.0035 3T3 fibroblasts GTGGCACATC (7) 3.5 0.0035 3T3 fibroblasts TGCGAGCAGA (4) 3.5 0.0035 E15 cortex GTGGCACACA (30) 24.7 0.0247 E15 cortex CAGCGAGCTG (3) 14.8 0.0148 E15 cortex GCCTGTTCCA (5) 9.9 0.0099 E15 cortex CAGGCACATC (3) 4.9 0.0049 E15 cortex CGGGAAAGCA (5) 4.9 0.0049 E15 cortex GCCTCTGGAG (9) 4.9 0.0049 E15 cortex GTGATAGTTA (3) 4.9 0.0049 E15 cortex TTGTAAAAGG (4) 4.9 0.0049 P1 cortex TTGTAAAAGG (4) 22.7 0.0227 P1 cortex TAAAATAAAA (14) 13.6 0.0136 P1 cortex CGGGAAAGCA (5) 4.5 0.0045 P1 cortex CTGTAAACTC (2) 4.5 0.0045 P1 cortex GCCTCTGGTG (11) 4.5 0.0045 P1 cortex GTGATAGTTA (3) 4.5 0.0045 P1 cortex GTGGCACACA (30) 4.5 0.0045 P1 cortex TAACAATAAA (2) 4.5 0.0045 Hypothalamus TGGTTGGGGA (6) 70.6 0.0706 Hypothalamus GCCTCTGGTG (11) 16.3 0.0163 Hypothalamus TTGTAAAAGG (4) 16.3 0.0163 Hypothalamus GGGAGTGGGG (3) 12.7 0.0127 Hypothalamus TAAAATAAAA (14) 12.7 0.0127 Hypothalamus GTGGCACACA (30) 7.2 0.0072 Hypothalamus CTTTTGAGTT (6) 5.4 0.0054 Hypothalamus GCCTGTTCCA (5) 5.4 0.0054 Hypothalamus TATATGCACT (3) 5.4 0.0054 Hypothalamus CAGCGAGCTG (3) 1.8 0.0018 Hypothalamus CGGGAAAGCA (5) 1.8 0.0018 Hypothalamus GGGCTCTGGG (8) 1.8 0.0018 Hypothalamus TAACAATAAA (2) 1.8 0.0018 Hypothalamus TCTACAAAAA (6) 1.8 0.0018 E12.5 retina GCCTCTGGTG (11) 56.3 0.0563 E12.5 retina GCCTGTTCCA (5) 35.7 0.0357 E12.5 retina TTGTAAAAGG (4) 18.8 0.0188 E12.5 retina GTGGCACACA (30) 11.3 0.0113 E12.5 retina TAAAATAAAA (14) 11.3 0.0113 E12.5 retina CTTTTGAGTT (6) 7.5 0.0075 E12.5 retina GTGGCACATC (7) 3.8 0.0038 E12.5 retina GCCCTCTGGG (7) 1.9 0.0019 E12.5 retina GGGCTCTGGG (8) 1.9 0.0019 E14.5 retina GCCTCTGGTG (11) 23.7 0.0237 E14.5 retina GCCTGTTCCA (5) 20 0.02 E14.5 retina GTGGCACACA (30) 18.2 0.0182 E14.5 retina TTGTAAAAGG (4) 18.2 0.0182 E14.5 retina CTTTTGAGTT (6) 3.6 0.0036 E14.5 retina TAAAATAAAA (14) 3.6 0.0036 E14.5 retina CAGCGAGCTG (3) 1.8 0.0018 E14.5 retina CGGGAAAGCA (5) 1.8 0.0018 E14.5 retina CTGGCACATC (3) 1.8 0.0018 E14.5 retina GGGAGTGGGG (3) 1.8 0.0018 E14.5 retina GTGATAGTTA (3) 1.8 0.0018 E14.5 retina TAACAATAAA (2) 1.8 0.0018 E14.5 retina TGATAGTTAT (3) 1.8 0.0018 E14.5 retina TGGTTTGGGG (4) 1.8 0.0018 E16.5 retina GCCTCTGGTG (11) 39.8 0.0398 E16.5 retina GTGGCACACA (30) 9.1 0.0091 E16.5 retina GCCTGTTCCA (5) 7.2 0.0072 E16.5 retina TTGTAAAAGG (4) 7.2 0.0072 E16.5 retina TAAAATAAAA (14) 5.4 0.0054 E16.5 retina CAGCGAGCTG (3) 1.8 0.0018 E16.5 retina CGGGAAAGCA (5) 1.8 0.0018 E16.5 retina CTGGCACATC (3) 1.8 0.0018 E16.5 retina CTTTTGAGTT (6) 1.8 0.0018 E16.5 retina GCCTCTGCAG (7) 1.8 0.0018 E16.5 retina GGGCTCTGGG (8) 1.8 0.0018 E16.5 retina TCTACAAAAA (6) 1.8 0.0018 E16.5 retina TGGTTTGGGG (4) 1.8 0.0018 E18.5 retina GCCTCTGGTG (11) 52.8 0.0528 E18.5 retina TTGTAAAAGG (4) 20 0.02 E18.5 retina TAAAATAAAA (14) 14.6 0.0146 E18.5 retina GTGGCACACA (30) 5.5 0.0055 E18.5 retina GCCTGTTCCA (5) 3.6 0.0036 E18.5 retina CAGGCACATC (3) 1.8 0.0018 E18.5 retina CTGGCACATC (3) 1.8 0.0018 E18.5 retina CTGTAAACTC (2) 1.8 0.0018 E18.5 retina CTTTTGAGTT (6) 1.8 0.0018 E18.5 retina GCCTCTGCAG (7) 1.8 0.0018 E18.5 retina GTATGATGCA (5) 1.8 0.0018 E18.5 retina TAACAATAAA (2) 1.8 0.0018 E18.5 retina TGGTTGGGGA (6) 1.8 0.0018 P0.5 retina GCCTCTGGTG (11) 45.1 0.0451 P0.5 retina TTGTAAAAGG (4) 13.7 0.0137 P0.5 retina GTGGCACACA (30) 11.8 0.0118 P0.5 retina GCCTGTTCCA (5) 9.8 0.0098 P0.5 retina GCCTCTGGAG (9) 3.9 0.0039 P0.5 retina GTTTCTGGAG (4) 3.9 0.0039 P0.5 retina CAGCGAGCTG (3) 2 0.002 P0.5 retina CAGGCACATC (3) 2 0.002 P0.5 retina CTTTTGAGTT (6) 2 0.002 P0.5 retina GGGAGTGGGG (3) 2 0.002 P0.5 retina TAAAATAAAA (14) 2 0.002 P0.5 retina TCCCGGGAAT (3) 2 0.002 P2.5 retina GCCTCTGGTG (11) 45.8 0.0458 P2.5 retina GTGGCACACA (30) 17.6 0.0176 P2.5 retina TTGTAAAAGG (4) 15.8 0.0158 P2.5 retina GCCTGTTCCA (5) 14.1 0.0141 P2.5 retina TAAAATAAAA (14) 8.8 0.0088 P2.5 retina GGGAGTGGGG (3) 3.5 0.0035 P2.5 retina CGGGAAAGCA (5) 1.8 0.0018 P2.5 retina CTGGCACATC (3) 1.8 0.0018 P2.5 retina CTTTTGAGTT (6) 1.8 0.0018 P2.5 retina TATATGCACT (3) 1.8 0.0018 P2.5 retina TCTACAAAAA (6) 1.8 0.0018 P2.5 retina TGGTTGGGGA (6) 1.8 0.0018 P4.5 retina TTGTAAAAGG (4) 35.7 0.0357 P4.5 retina GCCTCTGGTG (11) 31.7 0.0317 P4.5 retina TAAAATAAAA (14) 27.7 0.0277 P4.5 retina GCCTGTTCCA (5) 21.8 0.0218 P4.5 retina GTGGCACACA (30) 11.9 0.0119 P4.5 retina CAGGCACATC (3) 7.9 0.0079 P4.5 retina CTTTTGAGTT (6) 5.9 0.0059 P4.5 retina CGGGAAAGCA (5) 2 0.002 P4.5 retina CTGTAAACTC (2) 2 0.002 P4.5 retina GGGAGTGGGG (3) 2 0.002 P4.5 retina GTATGATGCA (5) 2 0.002 P6.5 retina GCCTCTGGTG (11) 26.7 0.0267 P6.5 retina GTGGCACACA (30) 26.7 0.0267 P6.5 retina GCCTGTTCCA (5) 13.3 0.0133 P6.5 retina TAAAATAAAA (14) 11.7 0.0117 P6.5 retina CTTTTGAGTT (6) 6.7 0.0067 P6.5 retina TTGTAAAAGG (4) 5 0.005 P6.5 retina AAGGATTTAA (3) 3.3 0.0033 P6.5 retina CGGGAAAGCA (5) 3.3 0.0033 P6.5 retina GCCACCACCA (9) 3.3 0.0033 P6.5 retina CAGGCACATC (3) 1.7 0.0017 P6.5 retina GGGAGTGGGG (3) 1.7 0.0017 P10.5 crx- retina TTGTAAAAGG (4) 22.3 0.0223 P10.5 crx- retina GCCTCTGGTG (11) 18.6 0.0186 P10.5 crx- retina GTGGCACACA (30) 13 0.013 P10.5 crx- retina GCCTGTTCCA (5) 11.1 0.0111 P10.5 crx- retina CTTTTGAGTT (6) 9.3 0.0093 P10.5 crx- retina GGGAGTGGGG (3) 7.4 0.0074 P10.5 crx- retina CAGGCACATC (3) 5.6 0.0056 P10.5 crx- retina TAAAATAAAA (14) 5.6 0.0056 P10.5 crx- retina TCTTTTTTTT (12) 3.7 0.0037 P10.5 crx- retina GCCCTCTGGG (7) 1.9 0.0019 P10.5 crx+ retina GCCTCTGGTG (11) 30.8 0.0308 P10.5 crx+ retina GCCTGTTCCA (5) 25 0.025 P10.5 crx+ retina TTGTAAAAGG (4) 11.5 0.0115 P10.5 crx+ retina GTGGCACACA (30) 7.7 0.0077 P10.5 crx+ retina CTTTTGAGTT (6) 3.8 0.0038 P10.5 crx+ retina GGGAGTGGGG (3) 3.8 0.0038 P10.5 crx+ retina CAGGCACATC (3) 1.9 0.0019 P10.5 crx+ retina TAAAATAAAA (14) 1.9 0.0019 P10.5 crx+ retina TGATAGTTAT (3) 1.9 0.0019 Adult retinal GCCTCTGGTG (11) 24.1 0.0241 Adult retinal TTGTAAAAGG (4) 7.4 0.0074 Adult retinal AACAGGCAGT (3) 5.6 0.0056 Adult retinal GCCTGTTCCA (5) 5.6 0.0056 Adult retinal GTGGCACACA (30) 5.6 0.0056 Adult retinal CAGGCACATC (3) 1.9 0.0019 Adult retinal CTTTTGAGTT (6) 1.9 0.0019 Adult retinal GGGAGTGGGG (3) 1.9 0.0019 Adult retinal GTATGATGCA (5) 1.9 0.0019 Adult retinal GTGATAGTTA (3) 1.9 0.0019 Adult retinal TATATGCACT (3) 1.9 0.0019 Adult retinal TCTACAAAAA (6) 1.9 0.0019 ONL GTGGCACACA (30) 24.9 0.0249 ONL GCCTCTGGTG (11) 13.4 0.0134 ONL CTTTTGAGTT (6) 11.5 0.0115 ONL GCCTGTTCCA (5) 11.5 0.0115 ONL TTGTAAAAGG (4) 9.6 0.0096 ONL CGGGAAAGCA (5) 7.7 0.0077 ONL TAAAATAAAA (14) 7.7 0.0077 ONL CTGTAAACTC (2) 3.8 0.0038 ONL GGGAGTGGGG (3) 3.8 0.0038 ONL TCTTTTTTTT (12) 3.8 0.0038 ONL GGGCTCTGGG (8) 1.9 0.0019 ONL GTGATAGTTA (3) 1.9 0.0019