Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.27330	Smarce1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	11		57376
Mm.27330	5830412H02Rik	RIKEN cDNA 5830412H02 gene	11		74752
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 126 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGGTGGAAG (6) 8.2 0.0082 P8 Cb GC GAGAAAGGAG (6) 4.9 0.0049 P8 Cb GC GCAAACAAAA (8) 3.3 0.0033 P8 Cb GC CTGTCAACCC (3) 1.6 0.0016 P8 Cb GC TACACACACA (29) 1.6 0.0016 P8 Cb GC TGAGCATACT (3) 1.6 0.0016 Cb medulloblastoma GAGAAAAGGA (9) 9.2 0.0092 Cb medulloblastoma TGAGCATACT (3) 6.9 0.0069 Cb medulloblastoma GAGAAAGGAG (6) 2.3 0.0023 Cb medulloblastoma GCAAACAAAA (8) 2.3 0.0023 Cb medulloblastoma TACACACACA (29) 2.3 0.0023 P8 GC+1d culture GAGGTGGAAG (6) 9.1 0.0091 P8 GC+1d culture GAGAAAGGAG (6) 8 0.008 P8 GC+1d culture TGAGCATACT (3) 5.7 0.0057 P8 GC+1d culture GATGAACAGC (6) 2.3 0.0023 P8 GC+1d culture TTGTATCAAC (2) 2.3 0.0023 P8 GC+1d culture CTGTCAACCC (3) 1.1 0.0011 P8 GC+1d culture GAGAAAAGGA (9) 1.1 0.0011 P8 GC+1d culture GATGAACGGC (2) 1.1 0.0011 P8 GC+SHH+1d culture TGAGCATACT (3) 12.9 0.0129 P8 GC+SHH+1d culture GAGGTGGAAG (6) 11.7 0.0117 P8 GC+SHH+1d culture GAGAAAGGAG (6) 7 0.007 P8 GC+SHH+1d culture CTGTCAACCC (3) 3.5 0.0035 P8 GC+SHH+1d culture GAGAAAAGGA (9) 3.5 0.0035 P8 GC+SHH+1d culture GATGAACAGC (6) 2.3 0.0023 P8 GC+SHH+1d culture GCAAACAAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture GGAAGAAAAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TTGTATCAAC (2) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CCCAGCTTCC (8) 7 0.007 3T3 fibroblasts CTGTCAACCC (3) 3.5 0.0035 3T3 fibroblasts GAGGTGGAAG (6) 3.5 0.0035 3T3 fibroblasts TGAGCATACT (3) 3.5 0.0035 E15 cortex GAGAAAAGGA (9) 14.8 0.0148 E15 cortex GAGAAAGGAG (6) 9.9 0.0099 E15 cortex GAGGTGGAAG (6) 9.9 0.0099 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGAGCATACT (3) 4.9 0.0049 P1 cortex TGAGCATACT (3) 22.7 0.0227 Hypothalamus TACACACACA (29) 7.2 0.0072 Hypothalamus GAGAAAAGGA (9) 5.4 0.0054 Hypothalamus GAGAAAGGAG (6) 3.6 0.0036 Hypothalamus GAGGTGGAAG (6) 3.6 0.0036 Hypothalamus TGAGCATACT (3) 1.8 0.0018 Hypothalamus TTGTATCAAC (2) 1.8 0.0018 E12.5 retina GAGGTGGAAG (6) 7.5 0.0075 E12.5 retina TGAGCATACT (3) 7.5 0.0075 E12.5 retina CTGTCAACCC (3) 5.6 0.0056 E12.5 retina TTGTATCAAC (2) 5.6 0.0056 E12.5 retina GAGAAAGGAG (6) 3.8 0.0038 E12.5 retina GATGAACAGC (6) 3.8 0.0038 E12.5 retina GAGAAAAGGA (9) 1.9 0.0019 E12.5 retina TACACACACA (29) 1.9 0.0019 E14.5 retina TGAGCATACT (3) 7.3 0.0073 E14.5 retina TACACACACA (29) 5.5 0.0055 E14.5 retina CTGTCAACCC (3) 3.6 0.0036 E14.5 retina GATGAACAGC (6) 3.6 0.0036 E14.5 retina TTGTATCAAC (2) 1.8 0.0018 E16.5 retina TGAGCATACT (3) 10.9 0.0109 E16.5 retina GAGAAAGGAG (6) 9.1 0.0091 E16.5 retina CTGTCAACCC (3) 3.6 0.0036 E16.5 retina GAGGTGGAAG (6) 3.6 0.0036 E16.5 retina TACACACACA (29) 3.6 0.0036 E16.5 retina GATGAACAGC (6) 1.8 0.0018 E18.5 retina GAGGTGGAAG (6) 9.1 0.0091 E18.5 retina GTGGCCGAAA (5) 5.5 0.0055 E18.5 retina TGAGCATACT (3) 5.5 0.0055 E18.5 retina GAGAAAGGAG (6) 3.6 0.0036 E18.5 retina GGAAGAAAAG (3) 3.6 0.0036 E18.5 retina CTGTCAACCC (3) 1.8 0.0018 E18.5 retina TACACACACA (29) 1.8 0.0018 P0.5 retina TGAGCATACT (3) 11.8 0.0118 P0.5 retina GAGGTGGAAG (6) 9.8 0.0098 P0.5 retina TACACACACA (29) 5.9 0.0059 P0.5 retina CTGTCAACCC (3) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina GAGAAAGGAG (6) 2 0.002 P0.5 retina GTGGCCGAAA (5) 2 0.002 P2.5 retina GAGGTGGAAG (6) 12.3 0.0123 P2.5 retina GTGGCCGAAA (5) 10.6 0.0106 P2.5 retina TGAGCATACT (3) 5.3 0.0053 P2.5 retina CCCAGCTTCC (8) 1.8 0.0018 P2.5 retina GAGAAAAGGA (9) 1.8 0.0018 P2.5 retina GATGAACAGC (6) 1.8 0.0018 P2.5 retina GCAAACAAAA (8) 1.8 0.0018 P2.5 retina GGAAGAAAAG (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina GAGAAAGGAG (6) 15.9 0.0159 P4.5 retina GTGGCCGAAA (5) 7.9 0.0079 P4.5 retina GAGGTGGAAG (6) 5.9 0.0059 P4.5 retina CTGTCAACCC (3) 4 0.004 P4.5 retina GCAAACAAAA (8) 4 0.004 P4.5 retina TACACACACA (29) 4 0.004 P4.5 retina TGAGCATACT (3) 4 0.004 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina GAGAAAGGAG (6) 18.3 0.0183 P6.5 retina TGAGCATACT (3) 8.3 0.0083 P6.5 retina GAGGTGGAAG (6) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina GTGGCCGAAA (5) 3.3 0.0033 P6.5 retina TACACACACA (29) 3.3 0.0033 P6.5 retina GGAAGAAAAG (3) 1.7 0.0017 P10.5 crx- retina TGAGCATACT (3) 11.1 0.0111 P10.5 crx- retina GAGAAAGGAG (6) 9.3 0.0093 P10.5 crx- retina TACACACACA (29) 3.7 0.0037 P10.5 crx- retina CTGTCAACCC (3) 1.9 0.0019 P10.5 crx- retina GAGAAAAGGA (9) 1.9 0.0019 P10.5 crx- retina GTGGCCGAAA (5) 1.9 0.0019 P10.5 crx+ retina TGAGCATACT (3) 11.5 0.0115 P10.5 crx+ retina GTGGCCGAAA (5) 7.7 0.0077 P10.5 crx+ retina GGAAGAAAAG (3) 5.8 0.0058 P10.5 crx+ retina CCCAGCTTCC (8) 1.9 0.0019 P10.5 crx+ retina GATGAACGGC (2) 1.9 0.0019 P10.5 crx+ retina TACACACACA (29) 1.9 0.0019 P10.5 crx+ retina TTGTATCAAC (2) 1.9 0.0019 Adult retinal GAGAAAGGAG (6) 5.6 0.0056 Adult retinal TACACACACA (29) 5.6 0.0056 Adult retinal GAGGTGGAAG (6) 3.7 0.0037 Adult retinal GTGGCCGAAA (5) 3.7 0.0037 Adult retinal GAGAAAAGGA (9) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TGAGCATACT (3) 1.9 0.0019 ONL TACACACACA (29) 13.4 0.0134 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GTGGCCGAAA (5) 3.8 0.0038 ONL GAGAAAGGAG (6) 1.9 0.0019