Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2756	Hmgn1	high mobility group nucleosomal binding domain 1	16	16 69.8 cM	15312
Gene Ontology	chromatin | DNA binding | DNA packaging | nucleus
Human Homolog	HMGN1[high-mobility group nucleosome binding domain 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 78 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACCACAGACA GCAGTCCATT TAATAAAAAT TACACAAATA TACACAAATG (2) 43.9 0.0439 Cb medulloblastoma TAATAAAAAT TTAATAAAAA (2) 11.5 0.0115 P8 GC+1d culture ACCACAGACA GCAGTCCATT GTTTTTTTAA (2) TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) 37.5 0.0375 P8 GC+SHH+1d culture ACCACAGACA AGCTGGGCAG (2) TAATAAAAAT TACACAAATG (2) 65.6 0.0656 3T3 fibroblasts AACACAATGT AGCTGGGCAG (2) 10.5 0.0105 E15 cortex AGCTGGGCAG (2) TAATAAAAAT 14.8 0.0148 P1 cortex TAATAAAAAT 4.5 0.0045 Hypothalamus TAATAAAAAT TACACAAATA TACACAAATG (2) 12.6 0.0126 E12.5 retina ACCACAGACA TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) 28.2 0.0282 E14.5 retina AACACAATGT TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) 82 0.082 E16.5 retina GCAGTCCATT TAATAAAAAT TACACAAATG (2) 57.9 0.0579 E18.5 retina ACCACAGACA TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) 81.8 0.0818 P0.5 retina ACCACAGACA GCAGTCCATT GTTTTTTTAA (2) TAATAAAAAT TACACAAATG (2) 17.7 0.0177 P2.5 retina ACCACAGACA GCAGTCCATT TAATAAAAAT 54.6 0.0546 P4.5 retina AACACAATGT ACCACAGACA GCAGTCCATT GTTTTTTTAA (2) TAATAAAAAT TTAATAAAAA (2) 35.8 0.0358 P6.5 retina AACACAATGT GTTTTTTTAA (2) TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) 48.5 0.0485 P10.5 crx- retina AACACAATGT ACCACAGACA GCAGTCCATT TAATAAAAAT TACACAAATG (2) 22.3 0.0223 P10.5 crx+ retina AACACAATGT ACCACAGACA GCAGTCCATT TAATAAAAAT TACACAAATG (2) 46 0.046 Adult retinal ACCACAGACA GTTTTTTTAA (2) TAATAAAAAT TACACAAATA 26 0.026 ONL ACCACAGACA GCAGTCCATT GTTTTTTTAA (2) TAATAAAAAT TACACAAATA 70.8 0.0708