Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.276381
AI225873
EST AI225873
6
30896
Mm.276381
Tnpo3
transportin 3
6
6 7.2 cM
320938
Gene Ontology
nucleus
|
protein transport
|
receptor activity
|
transport
Human Homolog
TNPO3[transportin 3]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 111 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAAGAAATCA
(
8
)
6.5
0.0065
P8 Cb GC
GGGTGGGAAG
(
7
)
6.5
0.0065
P8 Cb GC
AGGGAGTTCC
(
4
)
3.3
0.0033
P8 Cb GC
GTTGTTGCAT (
4
)
3.3
0.0033
P8 Cb GC
CCACACCTCA (
3
)
1.6
0.0016
P8 Cb GC
GCCTTAGCAT (
3
)
1.6
0.0016
Cb medulloblastoma
GAAGAAATCA
(
8
)
6.9
0.0069
Cb medulloblastoma
AAAATGAAGA
(
7
)
2.3
0.0023
Cb medulloblastoma
GTTGTTGCAT (
4
)
2.3
0.0023
P8 GC+1d culture
GGGTGGGAAG
(
7
)
12.6
0.0126
P8 GC+1d culture
GAGGGAGCCA
(
6
)
5.7
0.0057
P8 GC+1d culture
GCCTTAGCAT (
3
)
4.6
0.0046
P8 GC+1d culture
CAGTGCACAC
(
3
)
1.1
0.0011
P8 GC+1d culture
GTTGTTGCAT (
4
)
1.1
0.0011
P8 GC+1d culture
TTGATTTTCT
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
GGGTGGGAAG
(
7
)
18.7
0.0187
P8 GC+SHH+1d culture
GGGGTGGGGA (
6
)
2.3
0.0023
P8 GC+SHH+1d culture
CCACACCTCA (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
CTTTTTTAAA (
9
)
1.2
0.0012
P8 GC+SHH+1d culture
GCCTTAGCAT (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GTTGTTGCAT (
4
)
1.2
0.0012
3T3 fibroblasts
GGGTGGGAAG
(
7
)
28
0.028
3T3 fibroblasts
CAGGTTGACA
(
4
)
10.5
0.0105
3T3 fibroblasts
GCCTTAGCAT (
3
)
3.5
0.0035
E15 cortex
GGGTGGGAAG
(
7
)
29.7
0.0297
P1 cortex
GCCTTAGCAT (
3
)
9.1
0.0091
P1 cortex
CAGGTTGACA
(
4
)
4.5
0.0045
P1 cortex
CTTTTTTAAA (
9
)
4.5
0.0045
P1 cortex
GGGTGGGAAG
(
7
)
4.5
0.0045
Hypothalamus
AAGCAGCCTC (
5
)
7.2
0.0072
Hypothalamus
GGGGTGGGGA (
6
)
3.6
0.0036
Hypothalamus
GGGTGGGAAG
(
7
)
3.6
0.0036
Hypothalamus
CCACACCTCA (
3
)
1.8
0.0018
Hypothalamus
GAAGAAATCA
(
8
)
1.8
0.0018
Hypothalamus
GAGGGAGCCA
(
6
)
1.8
0.0018
E12.5 retina
GGGTGGGAAG
(
7
)
18.8
0.0188
E12.5 retina
CAGGTTGACA
(
4
)
5.6
0.0056
E12.5 retina
CTTTTTTAAG (
5
)
3.8
0.0038
E12.5 retina
GTTGTTGCAT (
4
)
3.8
0.0038
E12.5 retina
CTTTTTTAAA (
9
)
1.9
0.0019
E12.5 retina
GAAGAAATCA
(
8
)
1.9
0.0019
E14.5 retina
GGGTGGGAAG
(
7
)
14.6
0.0146
E14.5 retina
CTTTTTTAAA (
9
)
3.6
0.0036
E14.5 retina
CAGTGCACAC
(
3
)
1.8
0.0018
E14.5 retina
GAGGGAGCCA
(
6
)
1.8
0.0018
E14.5 retina
GGGTGGGAGG (
5
)
1.8
0.0018
E16.5 retina
GGGTGGGAAG
(
7
)
16.3
0.0163
E16.5 retina
GCCTTAGCAT (
3
)
5.4
0.0054
E16.5 retina
CAGTGCACAC
(
3
)
1.8
0.0018
E16.5 retina
GAGGGAGCCA
(
6
)
1.8
0.0018
E16.5 retina
GTTGTTGCAT (
4
)
1.8
0.0018
E18.5 retina
GGGTGGGAAG
(
7
)
7.3
0.0073
E18.5 retina
GGGGTGGGGA (
6
)
3.6
0.0036
E18.5 retina
AGGGAGTTCC
(
4
)
1.8
0.0018
E18.5 retina
GAAGAAATCA
(
8
)
1.8
0.0018
E18.5 retina
GCCTTAGCAT (
3
)
1.8
0.0018
E18.5 retina
GGGTGGGAGG (
5
)
1.8
0.0018
E18.5 retina
TTGATTTTCT
(
3
)
1.8
0.0018
P0.5 retina
GGGTGGGAAG
(
7
)
11.8
0.0118
P0.5 retina
CTTTTTTAAA (
9
)
3.9
0.0039
P0.5 retina
GCCTTAGCAT (
3
)
3.9
0.0039
P0.5 retina
AAAATGAAAA (
10
)
2
0.002
P0.5 retina
AAAATGAAGA
(
7
)
2
0.002
P0.5 retina
CTTTTTTAAG (
5
)
2
0.002
P0.5 retina
GAGGGAGCCA
(
6
)
2
0.002
P0.5 retina
GGGGTGGGGA (
6
)
2
0.002
P2.5 retina
GGGTGGGAAG
(
7
)
28.2
0.0282
P2.5 retina
CTTTTTTAAG (
5
)
3.5
0.0035
P2.5 retina
AAAATGAAGA
(
7
)
1.8
0.0018
P2.5 retina
CAGGTTGACA
(
4
)
1.8
0.0018
P2.5 retina
CCACACCTCA (
3
)
1.8
0.0018
P2.5 retina
CTTTTTTAAA (
9
)
1.8
0.0018
P2.5 retina
GAAGAAATCA
(
8
)
1.8
0.0018
P2.5 retina
GGGGTGGGGA (
6
)
1.8
0.0018
P4.5 retina
GGGTGGGAAG
(
7
)
13.9
0.0139
P4.5 retina
CTTTTTTAAA (
9
)
2
0.002
P4.5 retina
GAGGGAGCCA
(
6
)
2
0.002
P4.5 retina
GCCTTAGCAT (
3
)
2
0.002
P4.5 retina
GTTGTTGCAT (
4
)
2
0.002
P4.5 retina
TTGATTTTCT
(
3
)
2
0.002
P6.5 retina
GGGTGGGAAG
(
7
)
23.3
0.0233
P6.5 retina
GCCTTAGCAT (
3
)
3.3
0.0033
P6.5 retina
CTTTTTTAAA (
9
)
1.7
0.0017
P6.5 retina
GAGGGAGCCA
(
6
)
1.7
0.0017
P6.5 retina
GGGTGGGAGG (
5
)
1.7
0.0017
P6.5 retina
GTTGTTGCAT (
4
)
1.7
0.0017
P10.5 crx- retina
GAAGAAATCA
(
8
)
5.6
0.0056
P10.5 crx- retina
GGGTGGGAAG
(
7
)
5.6
0.0056
P10.5 crx- retina
AGGGAGTTCC
(
4
)
1.9
0.0019
P10.5 crx- retina
CTTTTTTAAA (
9
)
1.9
0.0019
P10.5 crx+ retina
GGGTGGGAAG
(
7
)
9.6
0.0096
P10.5 crx+ retina
CAGGTTGACA
(
4
)
1.9
0.0019
P10.5 crx+ retina
CTTTTTTAAG (
5
)
1.9
0.0019
P10.5 crx+ retina
GAAGAAATCA
(
8
)
1.9
0.0019
P10.5 crx+ retina
GAGGGAGCCA
(
6
)
1.9
0.0019
Adult retinal
CAGGTTGACA
(
4
)
3.7
0.0037
Adult retinal
CCACACCTCA (
3
)
3.7
0.0037
Adult retinal
GAGGGAGCCA
(
6
)
3.7
0.0037
Adult retinal
GGGTGGGAAG
(
7
)
3.7
0.0037
Adult retinal
GAAGAAATCA
(
8
)
1.9
0.0019
Adult retinal
GTTGTTGCAT (
4
)
1.9
0.0019
ONL
AAAATGAAAA (
10
)
5.7
0.0057
ONL
GGGTGGGAAG
(
7
)
5.7
0.0057
ONL
GAGGGAGCCA
(
6
)
3.8
0.0038
ONL
GGGGTGGGGA (
6
)
3.8
0.0038
ONL
CCACACCTCA (
3
)
1.9
0.0019
ONL
CTTTTTTAAA (
9
)
1.9
0.0019
ONL
CTTTTTTAAG (
5
)
1.9
0.0019
ONL
GAAGAAATCA
(
8
)
1.9
0.0019
ONL
GCCTTAGCAT (
3
)
1.9
0.0019
ONL
GGGTGGGAGG (
5
)
1.9
0.0019
