Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277585	D16Ium29e	DNA segment, Chr 16, Indiana University Medical 29, expressed	16	16 46.3 cM	28180
Mm.277585	E030013M08Rik	RIKEN cDNA E030013M08 gene	16		319425
Mm.277585	App	amyloid beta (A4) precursor protein	16	16 56.0 cM	11820
Mm.277585	C76493	expressed sequence C76493	16		98007
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 245 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATAGCTTTCT (8) 93 0.093 P8 Cb GC TATCTTTGGA (4) 16.3 0.0163 P8 Cb GC CACACACACA (106) 11.4 0.0114 P8 Cb GC GACAAAAAAA (15) 6.5 0.0065 P8 Cb GC GAGGGGAGAA (9) 3.3 0.0033 P8 Cb GC GGTTTTGTGT (10) 3.3 0.0033 P8 Cb GC GTGGACCCCA (7) 3.3 0.0033 P8 Cb GC ACCTCCAGCC (7) 1.6 0.0016 P8 Cb GC ACTGTTCAAA (6) 1.6 0.0016 P8 Cb GC CCACTGAAAA (6) 1.6 0.0016 P8 Cb GC CTGAAGAAGT (8) 1.6 0.0016 P8 Cb GC GAAAAAGAAT (8) 1.6 0.0016 P8 Cb GC TATGAATGTT (5) 1.6 0.0016 Cb medulloblastoma ATAGCTTTCT (8) 166.5 0.1665 Cb medulloblastoma CACACACACA (106) 32.4 0.0324 Cb medulloblastoma GACAAAAAAA (15) 11.6 0.0116 Cb medulloblastoma TATCTTTGGA (4) 11.6 0.0116 Cb medulloblastoma GGGTAGGGGT (5) 6.9 0.0069 Cb medulloblastoma GAAAAAGAAT (8) 4.6 0.0046 Cb medulloblastoma GGTTTTGTGT (10) 4.6 0.0046 Cb medulloblastoma GTGGACCCCA (7) 4.6 0.0046 Cb medulloblastoma AATGTGGAGA (6) 2.3 0.0023 Cb medulloblastoma CCAGCCAACA (6) 2.3 0.0023 Cb medulloblastoma CTGAAGAAGT (8) 2.3 0.0023 P8 GC+1d culture ATAGCTTTCT (8) 162.1 0.1621 P8 GC+1d culture TATCTTTGGA (4) 13.7 0.0137 P8 GC+1d culture GACAAAAAAA (15) 9.1 0.0091 P8 GC+1d culture GGGTAGGGGT (5) 8 0.008 P8 GC+1d culture CACACACACA (106) 6.8 0.0068 P8 GC+1d culture GGTTTTGTGT (10) 5.7 0.0057 P8 GC+1d culture GCATAAGCAA (4) 3.4 0.0034 P8 GC+1d culture GTGGACCCCA (7) 3.4 0.0034 P8 GC+1d culture ACTGCATCTT (5) 2.3 0.0023 P8 GC+1d culture AAAAATAAAC (7) 1.1 0.0011 P8 GC+1d culture ACTGCCTCTT (7) 1.1 0.0011 P8 GC+1d culture ATGGATGGAT (5) 1.1 0.0011 P8 GC+1d culture CCAGCCAACA (6) 1.1 0.0011 P8 GC+1d culture TCTTGTTTGT (10) 1.1 0.0011 P8 GC+SHH+1d culture ATAGCTTTCT (8) 118.3 0.1183 P8 GC+SHH+1d culture TATCTTTGGA (4) 15.2 0.0152 P8 GC+SHH+1d culture CACACACACA (106) 9.4 0.0094 P8 GC+SHH+1d culture GGGTAGGGGT (5) 7 0.007 P8 GC+SHH+1d culture GACAAAAAAA (15) 5.9 0.0059 P8 GC+SHH+1d culture GTGGACCCCA (7) 4.7 0.0047 P8 GC+SHH+1d culture GGTTTTGTGT (10) 3.5 0.0035 P8 GC+SHH+1d culture ATGGATGGAT (5) 2.3 0.0023 P8 GC+SHH+1d culture CCAGCCAACA (6) 2.3 0.0023 P8 GC+SHH+1d culture GCATAAGCAA (4) 2.3 0.0023 P8 GC+SHH+1d culture GGCGTGGTGG (8) 2.3 0.0023 P8 GC+SHH+1d culture GTGAAGTTAT (7) 2.3 0.0023 P8 GC+SHH+1d culture TCTTGTTTGT (10) 2.3 0.0023 P8 GC+SHH+1d culture CTGCTGCCCT (16) 1.2 0.0012 P8 GC+SHH+1d culture GAAAAAGAAT (8) 1.2 0.0012 P8 GC+SHH+1d culture GGTCTTGTGT (9) 1.2 0.0012 3T3 fibroblasts CACACACACA (106) 17.5 0.0175 3T3 fibroblasts ATAGCTTTCT (8) 3.5 0.0035 3T3 fibroblasts GATGCCGAAT (6) 3.5 0.0035 3T3 fibroblasts GCGTGGTGGA (7) 3.5 0.0035 3T3 fibroblasts GTGGACCCCA (7) 3.5 0.0035 E15 cortex ATAGCTTTCT (8) 9.9 0.0099 E15 cortex GATGCCGAAT (6) 9.9 0.0099 E15 cortex GGGTAGGGGT (5) 9.9 0.0099 E15 cortex GGGTTTTGGG (9) 9.9 0.0099 E15 cortex AATGTGCAGA (5) 4.9 0.0049 E15 cortex ACCTCCAGCC (7) 4.9 0.0049 E15 cortex CACACACACA (106) 4.9 0.0049 E15 cortex CCAGCCAACA (6) 4.9 0.0049 E15 cortex CTGCTGCCCT (16) 4.9 0.0049 E15 cortex GGCGTGGTGG (8) 4.9 0.0049 E15 cortex GGGTTGGGGG (6) 4.9 0.0049 P1 cortex ATAGCTTTCT (8) 50 0.05 P1 cortex CACACACACA (106) 27.3 0.0273 P1 cortex GGGTAGGGGT (5) 18.2 0.0182 P1 cortex CTGAAGAAGT (8) 9.1 0.0091 P1 cortex TATCTTTGGA (4) 9.1 0.0091 P1 cortex CCAGCCAACA (6) 4.5 0.0045 P1 cortex CTGCTGCCCT (16) 4.5 0.0045 P1 cortex GACAAAAAAA (15) 4.5 0.0045 P1 cortex GCATAAGCAA (4) 4.5 0.0045 P1 cortex GGTTTTGTGT (10) 4.5 0.0045 Hypothalamus ATAGCTTTCT (8) 101.4 0.1014 Hypothalamus CACACACACA (106) 96 0.096 Hypothalamus TATCTTTGGA (4) 18.1 0.0181 Hypothalamus GCATAAGCAA (4) 14.5 0.0145 Hypothalamus GGGTAGGGGT (5) 7.2 0.0072 Hypothalamus GTGGACCCCA (7) 7.2 0.0072 Hypothalamus GAGGGGAGAA (9) 5.4 0.0054 Hypothalamus GACAAAAAAA (15) 3.6 0.0036 Hypothalamus ACCTCCAGCC (7) 1.8 0.0018 Hypothalamus ACTGCATCTT (5) 1.8 0.0018 Hypothalamus ACTGTTCAAA (6) 1.8 0.0018 Hypothalamus CTGAAGAAGT (8) 1.8 0.0018 Hypothalamus GGTTTTGTGT (10) 1.8 0.0018 Hypothalamus TATGAATGTT (5) 1.8 0.0018 E12.5 retina ATAGCTTTCT (8) 16.9 0.0169 E12.5 retina GAGGGGAGAA (9) 7.5 0.0075 E12.5 retina GTGGACCCCA (7) 7.5 0.0075 E12.5 retina CACACACACA (106) 3.8 0.0038 E12.5 retina TATGAATGTT (5) 3.8 0.0038 E12.5 retina AAAAATAAAC (7) 1.9 0.0019 E12.5 retina CCAGCCAACA (6) 1.9 0.0019 E12.5 retina CTGCTGCCCT (16) 1.9 0.0019 E12.5 retina GAAAAAGAAT (8) 1.9 0.0019 E12.5 retina GACAAAAAAA (15) 1.9 0.0019 E12.5 retina GCATAAGCAA (4) 1.9 0.0019 E12.5 retina TATCTTTGGA (4) 1.9 0.0019 E14.5 retina ATAGCTTTCT (8) 29.2 0.0292 E14.5 retina CACACACACA (106) 18.2 0.0182 E14.5 retina CCAGCCAACA (6) 5.5 0.0055 E14.5 retina GGGCCCTGGG (9) 5.5 0.0055 E14.5 retina CTGCTGCCCT (16) 3.6 0.0036 E14.5 retina GGGTTGGGGG (6) 3.6 0.0036 E14.5 retina AAAAATAAAC (7) 1.8 0.0018 E14.5 retina AATGTGCAGA (5) 1.8 0.0018 E14.5 retina ACCTCCAGCC (7) 1.8 0.0018 E14.5 retina GACAAAAAAA (15) 1.8 0.0018 E14.5 retina GCATAAGCAA (4) 1.8 0.0018 E14.5 retina GGGTAGGGGT (5) 1.8 0.0018 E14.5 retina GGTTTTGTGT (10) 1.8 0.0018 E16.5 retina ATAGCTTTCT (8) 43.5 0.0435 E16.5 retina CACACACACA (106) 12.7 0.0127 E16.5 retina GAGGGGAGAA (9) 7.2 0.0072 E16.5 retina CTGCTGCCCT (16) 5.4 0.0054 E16.5 retina GCGTGGTGGA (7) 3.6 0.0036 E16.5 retina GGTTTTGTGT (10) 3.6 0.0036 E16.5 retina GTGGACCCCA (7) 3.6 0.0036 E16.5 retina ACTGCCTCTT (7) 1.8 0.0018 E16.5 retina CCAGCCAACA (6) 1.8 0.0018 E16.5 retina GGGTAGGGGT (5) 1.8 0.0018 E16.5 retina TATCTTTGGA (4) 1.8 0.0018 E18.5 retina ATAGCTTTCT (8) 20 0.02 E18.5 retina CACACACACA (106) 5.5 0.0055 E18.5 retina GCATAAGCAA (4) 3.6 0.0036 E18.5 retina ATGGATGGAT (5) 1.8 0.0018 E18.5 retina GACAAAAAAA (15) 1.8 0.0018 E18.5 retina TATCTTTGGA (4) 1.8 0.0018 E18.5 retina TCTTGTTTGT (10) 1.8 0.0018 P0.5 retina ATAGCTTTCT (8) 29.4 0.0294 P0.5 retina CACACACACA (106) 7.9 0.0079 P0.5 retina GGGTAGGGGT (5) 5.9 0.0059 P0.5 retina TATGAATGTT (5) 3.9 0.0039 P0.5 retina ACAAAGTTCA (6) 2 0.002 P0.5 retina ACCTCCAGCC (7) 2 0.002 P0.5 retina CTGCTGCCCT (16) 2 0.002 P0.5 retina GAGGGGAGAA (9) 2 0.002 P0.5 retina GCGTGGTGGA (7) 2 0.002 P0.5 retina GGCGTGGTGG (8) 2 0.002 P0.5 retina GTGAAGTTAT (7) 2 0.002 P0.5 retina GTGGACCCCA (7) 2 0.002 P0.5 retina TATCTTTGGA (4) 2 0.002 P2.5 retina ATAGCTTTCT (8) 38.7 0.0387 P2.5 retina CACACACACA (106) 21.1 0.0211 P2.5 retina GGTTTTGTGT (10) 5.3 0.0053 P2.5 retina GGCGTGGTGG (8) 3.5 0.0035 P2.5 retina AGAGACTGGG (4) 1.8 0.0018 P2.5 retina ATAGCTTTTT (5) 1.8 0.0018 P2.5 retina GAGGGGAGAA (9) 1.8 0.0018 P2.5 retina GGGTAGGGGT (5) 1.8 0.0018 P2.5 retina GGTTTGTGTA (6) 1.8 0.0018 P2.5 retina GTGGACCCCA (7) 1.8 0.0018 P2.5 retina TATCTTTGGA (4) 1.8 0.0018 P4.5 retina ATAGCTTTCT (8) 57.5 0.0575 P4.5 retina TATCTTTGGA (4) 9.9 0.0099 P4.5 retina CACACACACA (106) 7.9 0.0079 P4.5 retina GTGGACCCCA (7) 4 0.004 P4.5 retina AGAGACTGGG (4) 2 0.002 P4.5 retina CCAGCCAACA (6) 2 0.002 P4.5 retina CTGCTGCCCT (16) 2 0.002 P4.5 retina GACAAAAAAA (15) 2 0.002 P4.5 retina GAGGGGAGAA (9) 2 0.002 P4.5 retina GCATAAGCAA (4) 2 0.002 P4.5 retina GGACAGAGGC (8) 2 0.002 P4.5 retina GGCGTGGTGG (8) 2 0.002 P4.5 retina GGGTAGGGGT (5) 2 0.002 P6.5 retina ATAGCTTTCT (8) 16.7 0.0167 P6.5 retina CACACACACA (106) 8.3 0.0083 P6.5 retina GGGTAGGGGT (5) 8.3 0.0083 P6.5 retina GTGGACCCCA (7) 5 0.005 P6.5 retina ACCTCCAGCC (7) 3.3 0.0033 P6.5 retina AAAAATAAAC (7) 1.7 0.0017 P6.5 retina CCACTGAAAA (6) 1.7 0.0017 P6.5 retina CTGAAGAAGT (8) 1.7 0.0017 P6.5 retina GACAAAAAAA (15) 1.7 0.0017 P6.5 retina GAGGGGAGAA (9) 1.7 0.0017 P6.5 retina GGGTTTTGGG (9) 1.7 0.0017 P6.5 retina GGTTTTGTGT (10) 1.7 0.0017 P6.5 retina TATCTTTGGA (4) 1.7 0.0017 P6.5 retina TATGAATGTT (5) 1.7 0.0017 P10.5 crx- retina ATAGCTTTCT (8) 44.6 0.0446 P10.5 crx- retina CCAGCCAACA (6) 20.4 0.0204 P10.5 crx- retina CACACACACA (106) 5.6 0.0056 P10.5 crx- retina TATGAATGTT (5) 5.6 0.0056 P10.5 crx- retina ATAGCTTTTT (5) 3.7 0.0037 P10.5 crx- retina GAGGGGAGAA (9) 3.7 0.0037 P10.5 crx- retina GGGTAGGGGT (5) 3.7 0.0037 P10.5 crx- retina ACTGCATCTT (5) 1.9 0.0019 P10.5 crx- retina ACTGCCTCTT (7) 1.9 0.0019 P10.5 crx- retina ACTGTTCAAA (6) 1.9 0.0019 P10.5 crx- retina CTGCTGCCCT (16) 1.9 0.0019 P10.5 crx- retina GCATAAGCAA (4) 1.9 0.0019 P10.5 crx- retina GGTTTTGTGT (10) 1.9 0.0019 P10.5 crx- retina GTGAAGTTAT (7) 1.9 0.0019 P10.5 crx+ retina ATAGCTTTCT (8) 40.4 0.0404 P10.5 crx+ retina GTGGACCCCA (7) 15.4 0.0154 P10.5 crx+ retina CACACACACA (106) 7.7 0.0077 P10.5 crx+ retina TATCTTTGGA (4) 5.8 0.0058 P10.5 crx+ retina GACAAAAAAA (15) 3.8 0.0038 P10.5 crx+ retina GGGTAGGGGT (5) 3.8 0.0038 P10.5 crx+ retina AATGTGGAGA (6) 1.9 0.0019 P10.5 crx+ retina GGTCTTGTGT (9) 1.9 0.0019 P10.5 crx+ retina GGTTTTGTGT (10) 1.9 0.0019 P10.5 crx+ retina TATGAATGTT (5) 1.9 0.0019 Adult retinal GGGTAGGGGT (5) 29.6 0.0296 Adult retinal ATAGCTTTCT (8) 16.7 0.0167 Adult retinal CACACACACA (106) 16.7 0.0167 Adult retinal GGACAGAGGC (8) 7.4 0.0074 Adult retinal CCAGCCAACA (6) 5.6 0.0056 Adult retinal GGCGTGGTGG (8) 3.7 0.0037 Adult retinal GTGGACCCCA (7) 3.7 0.0037 Adult retinal AAAAATAAAC (7) 1.9 0.0019 Adult retinal ACCTCCAGCC (7) 1.9 0.0019 Adult retinal ACTGCCTCTT (7) 1.9 0.0019 Adult retinal CTGCTGCCCT (16) 1.9 0.0019 Adult retinal GACAAAAAAA (15) 1.9 0.0019 Adult retinal GAGGGGAGAA (9) 1.9 0.0019 Adult retinal GCATAAGCAA (4) 1.9 0.0019 Adult retinal GGTTTTGTGT (10) 1.9 0.0019 Adult retinal TATCTTTGGA (4) 1.9 0.0019 ONL CACACACACA (106) 21.1 0.0211 ONL ATAGCTTTCT (8) 9.6 0.0096 ONL ACAAAGTTCA (6) 3.8 0.0038 ONL ACCTCCAGCC (7) 3.8 0.0038 ONL GACAAAAAAA (15) 3.8 0.0038 ONL GGGTAGGGGT (5) 3.8 0.0038 ONL GGTTTGTGTA (6) 3.8 0.0038 ONL GGTTTTGTGT (10) 3.8 0.0038 ONL AATGTGCAGA (5) 1.9 0.0019 ONL AATGTGGAGA (6) 1.9 0.0019 ONL AGAGACTGGG (4) 1.9 0.0019 ONL CCACTGAAAA (6) 1.9 0.0019 ONL CCAGCCAACA (6) 1.9 0.0019 ONL GGACAGAGGC (8) 1.9 0.0019 ONL GGCGTGGTGG (8) 1.9 0.0019 ONL GGGTTGGGGG (6) 1.9 0.0019 ONL GTGGACCCCA (7) 1.9 0.0019