Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277585	D16Ium29e	DNA segment, Chr 16, Indiana University Medical 29, expressed	16	16 46.3 cM	28180
Mm.277585	E030013M08Rik	RIKEN cDNA E030013M08 gene	16		319425
Mm.277585	App	amyloid beta (A4) precursor protein	16	16 56.0 cM	11820
Mm.277585	C76493	expressed sequence C76493	16		98007
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 124 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATAGCTTTCT (4) 93 0.093 P8 Cb GC TATCTTTGGA (4) 16.3 0.0163 P8 Cb GC GGTTTTGTGT (4) 3.3 0.0033 P8 Cb GC GTGGACCCCA (6) 3.3 0.0033 P8 Cb GC CCACTGAAAA (4) 1.6 0.0016 P8 Cb GC CTGAAGAAGT (5) 1.6 0.0016 P8 Cb GC GAAAAAGAAT (4) 1.6 0.0016 Cb medulloblastoma ATAGCTTTCT (4) 166.5 0.1665 Cb medulloblastoma TATCTTTGGA (4) 11.6 0.0116 Cb medulloblastoma GAAAAAGAAT (4) 4.6 0.0046 Cb medulloblastoma GGTTTTGTGT (4) 4.6 0.0046 Cb medulloblastoma GTGGACCCCA (6) 4.6 0.0046 Cb medulloblastoma CTGAAGAAGT (5) 2.3 0.0023 P8 GC+1d culture ATAGCTTTCT (4) 162.1 0.1621 P8 GC+1d culture TATCTTTGGA (4) 13.7 0.0137 P8 GC+1d culture GGTTTTGTGT (4) 5.7 0.0057 P8 GC+1d culture GCATAAGCAA (4) 3.4 0.0034 P8 GC+1d culture GTGGACCCCA (6) 3.4 0.0034 P8 GC+1d culture ACTGCATCTT (4) 2.3 0.0023 P8 GC+1d culture ACTGCCTCTT (4) 1.1 0.0011 P8 GC+1d culture ATGGATGGAT (4) 1.1 0.0011 P8 GC+SHH+1d culture ATAGCTTTCT (4) 118.3 0.1183 P8 GC+SHH+1d culture TATCTTTGGA (4) 15.2 0.0152 P8 GC+SHH+1d culture GTGGACCCCA (6) 4.7 0.0047 P8 GC+SHH+1d culture GGTTTTGTGT (4) 3.5 0.0035 P8 GC+SHH+1d culture ATGGATGGAT (4) 2.3 0.0023 P8 GC+SHH+1d culture GCATAAGCAA (4) 2.3 0.0023 P8 GC+SHH+1d culture CTGCTGCCCT (5) 1.2 0.0012 P8 GC+SHH+1d culture GAAAAAGAAT (4) 1.2 0.0012 3T3 fibroblasts ATAGCTTTCT (4) 3.5 0.0035 3T3 fibroblasts GCGTGGTGGA (4) 3.5 0.0035 3T3 fibroblasts GTGGACCCCA (6) 3.5 0.0035 E15 cortex ATAGCTTTCT (4) 9.9 0.0099 E15 cortex GGGTTTTGGG (6) 9.9 0.0099 E15 cortex AATGTGCAGA (5) 4.9 0.0049 E15 cortex CTGCTGCCCT (5) 4.9 0.0049 E15 cortex GGGTTGGGGG (4) 4.9 0.0049 P1 cortex ATAGCTTTCT (4) 50 0.05 P1 cortex CTGAAGAAGT (5) 9.1 0.0091 P1 cortex TATCTTTGGA (4) 9.1 0.0091 P1 cortex CTGCTGCCCT (5) 4.5 0.0045 P1 cortex GCATAAGCAA (4) 4.5 0.0045 P1 cortex GGTTTTGTGT (4) 4.5 0.0045 Hypothalamus ATAGCTTTCT (4) 101.4 0.1014 Hypothalamus TATCTTTGGA (4) 18.1 0.0181 Hypothalamus GCATAAGCAA (4) 14.5 0.0145 Hypothalamus GTGGACCCCA (6) 7.2 0.0072 Hypothalamus ACTGCATCTT (4) 1.8 0.0018 Hypothalamus CTGAAGAAGT (5) 1.8 0.0018 Hypothalamus GGTTTTGTGT (4) 1.8 0.0018 E12.5 retina ATAGCTTTCT (4) 16.9 0.0169 E12.5 retina GTGGACCCCA (6) 7.5 0.0075 E12.5 retina CTGCTGCCCT (5) 1.9 0.0019 E12.5 retina GAAAAAGAAT (4) 1.9 0.0019 E12.5 retina GCATAAGCAA (4) 1.9 0.0019 E12.5 retina TATCTTTGGA (4) 1.9 0.0019 E14.5 retina ATAGCTTTCT (4) 29.2 0.0292 E14.5 retina CTGCTGCCCT (5) 3.6 0.0036 E14.5 retina GGGTTGGGGG (4) 3.6 0.0036 E14.5 retina AATGTGCAGA (5) 1.8 0.0018 E14.5 retina GCATAAGCAA (4) 1.8 0.0018 E14.5 retina GGTTTTGTGT (4) 1.8 0.0018 E16.5 retina ATAGCTTTCT (4) 43.5 0.0435 E16.5 retina CTGCTGCCCT (5) 5.4 0.0054 E16.5 retina GCGTGGTGGA (4) 3.6 0.0036 E16.5 retina GGTTTTGTGT (4) 3.6 0.0036 E16.5 retina GTGGACCCCA (6) 3.6 0.0036 E16.5 retina ACTGCCTCTT (4) 1.8 0.0018 E16.5 retina TATCTTTGGA (4) 1.8 0.0018 E18.5 retina ATAGCTTTCT (4) 20 0.02 E18.5 retina GCATAAGCAA (4) 3.6 0.0036 E18.5 retina ATGGATGGAT (4) 1.8 0.0018 E18.5 retina TATCTTTGGA (4) 1.8 0.0018 P0.5 retina ATAGCTTTCT (4) 29.4 0.0294 P0.5 retina ACAAAGTTCA (4) 2 0.002 P0.5 retina CTGCTGCCCT (5) 2 0.002 P0.5 retina GCGTGGTGGA (4) 2 0.002 P0.5 retina GTGGACCCCA (6) 2 0.002 P0.5 retina TATCTTTGGA (4) 2 0.002 P2.5 retina ATAGCTTTCT (4) 38.7 0.0387 P2.5 retina GGTTTTGTGT (4) 5.3 0.0053 P2.5 retina AGAGACTGGG (4) 1.8 0.0018 P2.5 retina ATAGCTTTTT (4) 1.8 0.0018 P2.5 retina GTGGACCCCA (6) 1.8 0.0018 P2.5 retina TATCTTTGGA (4) 1.8 0.0018 P4.5 retina ATAGCTTTCT (4) 57.5 0.0575 P4.5 retina TATCTTTGGA (4) 9.9 0.0099 P4.5 retina GTGGACCCCA (6) 4 0.004 P4.5 retina AGAGACTGGG (4) 2 0.002 P4.5 retina CTGCTGCCCT (5) 2 0.002 P4.5 retina GCATAAGCAA (4) 2 0.002 P6.5 retina ATAGCTTTCT (4) 16.7 0.0167 P6.5 retina GTGGACCCCA (6) 5 0.005 P6.5 retina CCACTGAAAA (4) 1.7 0.0017 P6.5 retina CTGAAGAAGT (5) 1.7 0.0017 P6.5 retina GGGTTTTGGG (6) 1.7 0.0017 P6.5 retina GGTTTTGTGT (4) 1.7 0.0017 P6.5 retina TATCTTTGGA (4) 1.7 0.0017 P10.5 crx- retina ATAGCTTTCT (4) 44.6 0.0446 P10.5 crx- retina ATAGCTTTTT (4) 3.7 0.0037 P10.5 crx- retina ACTGCATCTT (4) 1.9 0.0019 P10.5 crx- retina ACTGCCTCTT (4) 1.9 0.0019 P10.5 crx- retina CTGCTGCCCT (5) 1.9 0.0019 P10.5 crx- retina GCATAAGCAA (4) 1.9 0.0019 P10.5 crx- retina GGTTTTGTGT (4) 1.9 0.0019 P10.5 crx+ retina ATAGCTTTCT (4) 40.4 0.0404 P10.5 crx+ retina GTGGACCCCA (6) 15.4 0.0154 P10.5 crx+ retina TATCTTTGGA (4) 5.8 0.0058 P10.5 crx+ retina GGTTTTGTGT (4) 1.9 0.0019 Adult retinal ATAGCTTTCT (4) 16.7 0.0167 Adult retinal GTGGACCCCA (6) 3.7 0.0037 Adult retinal ACTGCCTCTT (4) 1.9 0.0019 Adult retinal CTGCTGCCCT (5) 1.9 0.0019 Adult retinal GCATAAGCAA (4) 1.9 0.0019 Adult retinal GGTTTTGTGT (4) 1.9 0.0019 Adult retinal TATCTTTGGA (4) 1.9 0.0019 ONL ATAGCTTTCT (4) 9.6 0.0096 ONL ACAAAGTTCA (4) 3.8 0.0038 ONL GGTTTTGTGT (4) 3.8 0.0038 ONL AATGTGCAGA (5) 1.9 0.0019 ONL AGAGACTGGG (4) 1.9 0.0019 ONL CCACTGAAAA (4) 1.9 0.0019 ONL GGGTTGGGGG (4) 1.9 0.0019 ONL GTGGACCCCA (6) 1.9 0.0019