Mouse Retina SAGE Library    [Home]    [Libraries]    [Images]
Gene:              Accession:    
e.g., Rho or Rhodopsin e.g., BG297543 batch search
Tag:        Cytoband (Mm):    
e.g., CCCAGTTCAC e.g., 6 E3
Unigene:        Cytoband (Hs):    
e.g., Mm.2965 batch search e.g., 3q21-q24

 UniGene  Symbol  Name  Chr  Cytoband  LocusLink 
 Mm.277735 Col1a1procollagen, type I, alpha 1 11  11 56.0 cM  12842 
 Gene Ontology cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
 Human Homolog COL1A1[collagen, type I, alpha 1]
 Clusters 
   Neighbors    

No In Situ Hybridization images could be found.



SAGE Tags

Total 183 tags found with positive counts.

  all tags    reliable tags    sum by library with all tags    sum by library with reliable tags  
 Library  Tag (Other Genes)  Normalized Count  % in library 
P8 Cb GCAACAAAAAAA (2)
ACCGATGGCT
CTACGGGAGT (2)
GACTTTGGAA (2)
GCCAAAAAAA (4)
GCCAAGAAGA
GGAACCAGCC (2)
GGCAAGAAGA
GGCCAAAGAA
GGGCCCCCTG (2)
GGGGGCCCCC
GTCAAAAAAA
TTTTTTTCTT (2)
37.40.0374
Cb medulloblastomaAACAAAAAAA (2)
CTCACGCCGC
GCCAAAAAAA (4)
GCTTTGGGAA
GGAACCAGCC (2)
GGCCAAAGAA
GTCAAAAAAA
GTGACACGGG
GTGCTGGTGG (2)
50.60.0506
P8 GC+1d cultureAACAAAAAAA (2)
CTCACGCCGC
CTTTATTCCA
GACCAGCAGA (2)
GACTTTGGAA (2)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGGCCCCCTG (2)
GGGGGCCCCC
GTCAAAAAAA
GTGCTGGTGG (2)
TTTTTTTCTT (2)
50.20.0502
P8 GC+SHH+1d cultureAACAAAAAAA (2)
CTCACGCCGC
CTTTATTCCA
GACCAGCAGA (2)
GACTTTGGAA (2)
GCCAAAAAAA (4)
GCTTTGGGAA
GGAACCAGCC (2)
GGCAAGAAGA
GGCCAAAGAA
GGGCCCCCTG (2)
GGGGGCCCCC
GTCAAAAAAA
TTCAGCTTTG (2)
62.20.0622
3T3 fibroblastsACCGATGGCT
CTACGGGAGT (2)
CTTTATTCCA
GACCAGCAGA (2)
GACTTTGGAA (2)
GCCAAGAAGA
GGAACCAGCC (2)
GGGCCCCCTG (2)
TGCAGGCTGG (2)
213.80.2138
E15 cortexAACAAAAAAA (2)
ACCGATGGCT
AGCAGCGAGG (4)
GACCAGCAGA (2)
GACTTTGGAA (2)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGCCAAAGAA
GGGCCCCCTG (2)
GTCAAAAAAA
83.70.0837
P1 cortexGCCAAAAAAA (4)
GGAACCAGCC (2)
GGCCAAAGAA
GGGCCCCCTG (2)
GTCAAAAAAA
63.60.0636
HypothalamusAACAAAAAAA (2)
CTACGGGAGT (2)
CTCACGCCGC
GACTTTGGAG
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGGAAGAAGA (4)
GGGCCCCCTG (2)
GGGGGCCCCC
GTCAAAAAAA
GTGCTGGTGG (2)
43.30.0433
E12.5 retinaAACAAAAAAA (2)
GGAACCAGCC (2)
GGCCAAAGAA
GTCAAAAAAA
11.40.0114
E14.5 retinaAACAAAAAAA (2)
AGCAGCGAGG (4)
CTCACGCCGC
GAGGTGCTTT (2)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGCAAGAAGA
GGGAAGAAGA (4)
GTCAAAAAAA
TTTTTTTCTT (2)
45.40.0454
E16.5 retinaAGCAGCGAGG (4)
CTCACGCCGC
GACTTTGGAG
GCCAAAAAAA (4)
GGAACCAGCC (2)
GTCAAAAAAA
36.20.0362
E18.5 retinaAACAAAAAAA (2)
CACTTTGGAA
GACTTTGGAA (2)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGAAGACAGG
GGGCCCCCTG (2)
GGGGGCCCCC
GTCAAAAAAA
800.08
P0.5 retinaAACAAAAAAA (2)
GACTTTGGAA (2)
GACTTTGGAG
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGCCAAAGAA
GGGCCCCCTG (2)
GTCAAAAAAA
GTTTTGGCCT
37.50.0375
P2.5 retinaAACAAAAAAA (2)
AGCAGCGAGG (4)
CTTTATTCCA
GACTTTGGAA (2)
GCCAAAAAAA (4)
GCTTTGGGAA
GGAACCAGCC (2)
GGCCAAAGAA
GGGCCCCCTG (2)
GGGGGCCCCC
GTCAAAAAAA
390.039
P4.5 retinaAACAAAAAAA (2)
CTACGGGAGT (2)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGCAAGAAGA
GGCCAAAGAA
GGGCCCCCTG (2)
GGGGGCCCCC
GTCAAAAAAA
TGCAGGCTGG (2)
TTCAGCTTTG (2)
33.90.0339
P6.5 retinaAGCAGCGAGG (4)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGCCAAAGAA
GGGCCCCCTG (2)
GTCAAAAAAA
33.50.0335
P10.5 crx- retinaAACAAAAAAA (2)
AGCAGCGAGG (4)
GACTTTGGAA (2)
GAGGTGCTTT (2)
GCCAAAAAAA (4)
GGAAGACAGG
GTCAAAAAAA
GTGCTGGTGG (2)
TTTTTTTCTT (2)
33.60.0336
P10.5 crx+ retinaAACAAAAAAA (2)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GTCAAAAAAA
GTGCTGGTGG (2)
32.60.0326
Adult retinalACCGATGGCT
CACTTTGGAA
GACTTTGGAA (2)
GAGGTGCTTT (2)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGCCAAAGAA
GGGGGCCCCC
GTCAAAAAAA
GTGCTGGTGG (2)
GTTTTGGCCT
48.50.0485
ONLGACTTTGGAA (2)
GCCAAAAAAA (4)
GGAACCAGCC (2)
GGAAGACAGG
GGCCAAAGAA
GTCAAAAAAA
GTGCTGGTGG (2)
TTCAGCTTTG (2)
TTTTTTTCTT (2)
38.10.0381