Mouse Retina SAGE Library    [Home]    [Libraries]    [Images]

Gene:              Accession:    
e.g., Rho or Rhodopsin e.g., BG297543 batch search
Tag:        Cytoband (Mm):    
e.g., CCCAGTTCAC e.g., 6 E3
Unigene:        Cytoband (Hs):    
e.g., Mm.2965 batch search e.g., 3q21-q24


 UniGene  Symbol  Name  Chr  Cytoband  LocusLink 
 Mm.277735 Col1a1procollagen, type I, alpha 1 11  11 56.0 cM  12842 
 Gene Ontology cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
 Human Homolog COL1A1[collagen, type I, alpha 1]
 Clusters 
   Neighbors    

No In Situ Hybridization images could be found.



SAGE Tags

Total 183 tags found with positive counts.

  all tags    reliable tags    sum by library with all tags    sum by library with reliable tags  
 Library  Tag (Other Genes)  Normalized Count  % in library 
P8 Cb GCGCCAAAAAAA (23)6.50.0065
P8 Cb GCAACAAAAAAA (18)4.90.0049
P8 Cb GCGTCAAAAAAA (15)4.90.0049
P8 Cb GCGCCAAGAAGA (4)3.30.0033
P8 Cb GCGGAACCAGCC (4)3.30.0033
P8 Cb GCTTTTTTTCTT (9)3.30.0033
P8 Cb GCACCGATGGCT (2)1.60.0016
P8 Cb GCCTACGGGAGT (3)1.60.0016
P8 Cb GCGACTTTGGAA (6)1.60.0016
P8 Cb GCGGCAAGAAGA (5)1.60.0016
P8 Cb GCGGCCAAAGAA (6)1.60.0016
P8 Cb GCGGGCCCCCTG (6)1.60.0016
P8 Cb GCGGGGGCCCCC (6)1.60.0016
Cb medulloblastomaAACAAAAAAA (18)9.20.0092
Cb medulloblastomaGCCAAAAAAA (23)9.20.0092
Cb medulloblastomaGTGACACGGG9.20.0092
Cb medulloblastomaGTCAAAAAAA (15)6.90.0069
Cb medulloblastomaCTCACGCCGC4.60.0046
Cb medulloblastomaGGAACCAGCC (4)4.60.0046
Cb medulloblastomaGCTTTGGGAA (2)2.30.0023
Cb medulloblastomaGGCCAAAGAA (6)2.30.0023
Cb medulloblastomaGTGCTGGTGG (12)2.30.0023
P8 GC+1d cultureGTCAAAAAAA (15)12.60.0126
P8 GC+1d cultureGCCAAAAAAA (23)80.008
P8 GC+1d cultureGGGCCCCCTG (6)80.008
P8 GC+1d cultureGACTTTGGAA (6)4.60.0046
P8 GC+1d cultureAACAAAAAAA (18)3.40.0034
P8 GC+1d cultureGGAACCAGCC (4)3.40.0034
P8 GC+1d cultureCTCACGCCGC2.30.0023
P8 GC+1d cultureGACCAGCAGA (5)2.30.0023
P8 GC+1d cultureGGGGGCCCCC (6)2.30.0023
P8 GC+1d cultureCTTTATTCCA (4)1.10.0011
P8 GC+1d cultureGTGCTGGTGG (12)1.10.0011
P8 GC+1d cultureTTTTTTTCTT (9)1.10.0011
P8 GC+SHH+1d cultureGTCAAAAAAA (15)15.20.0152
P8 GC+SHH+1d cultureGCCAAAAAAA (23)10.50.0105
P8 GC+SHH+1d cultureGGGCCCCCTG (6)8.20.0082
P8 GC+SHH+1d cultureGGAACCAGCC (4)70.007
P8 GC+SHH+1d cultureAACAAAAAAA (18)5.90.0059
P8 GC+SHH+1d cultureGACTTTGGAA (6)4.70.0047
P8 GC+SHH+1d cultureCTCACGCCGC2.30.0023
P8 GC+SHH+1d cultureCTTTATTCCA (4)1.20.0012
P8 GC+SHH+1d cultureGACCAGCAGA (5)1.20.0012
P8 GC+SHH+1d cultureGCTTTGGGAA (2)1.20.0012
P8 GC+SHH+1d cultureGGCAAGAAGA (5)1.20.0012
P8 GC+SHH+1d cultureGGCCAAAGAA (6)1.20.0012
P8 GC+SHH+1d cultureGGGGGCCCCC (6)1.20.0012
P8 GC+SHH+1d cultureTTCAGCTTTG (8)1.20.0012
3T3 fibroblastsGACTTTGGAA (6)84.10.0841
3T3 fibroblastsCTTTATTCCA (4)42.10.0421
3T3 fibroblastsGACCAGCAGA (5)42.10.0421
3T3 fibroblastsGGAACCAGCC (4)140.014
3T3 fibroblastsGGGCCCCCTG (6)10.50.0105
3T3 fibroblastsTGCAGGCTGG (3)10.50.0105
3T3 fibroblastsACCGATGGCT (2)3.50.0035
3T3 fibroblastsCTACGGGAGT (3)3.50.0035
3T3 fibroblastsGCCAAGAAGA (4)3.50.0035
E15 cortexGTCAAAAAAA (15)24.70.0247
E15 cortexGGGCCCCCTG (6)14.80.0148
E15 cortexGGAACCAGCC (4)9.90.0099
E15 cortexAACAAAAAAA (18)4.90.0049
E15 cortexACCGATGGCT (2)4.90.0049
E15 cortexAGCAGCGAGG (9)4.90.0049
E15 cortexGACCAGCAGA (5)4.90.0049
E15 cortexGACTTTGGAA (6)4.90.0049
E15 cortexGCCAAAAAAA (23)4.90.0049
E15 cortexGGCCAAAGAA (6)4.90.0049
P1 cortexGTCAAAAAAA (15)22.70.0227
P1 cortexGGAACCAGCC (4)18.20.0182
P1 cortexGCCAAAAAAA (23)9.10.0091
P1 cortexGGGCCCCCTG (6)9.10.0091
P1 cortexGGCCAAAGAA (6)4.50.0045
HypothalamusGCCAAAAAAA (23)10.90.0109
HypothalamusCTCACGCCGC7.20.0072
HypothalamusGGGCCCCCTG (6)5.40.0054
HypothalamusGTCAAAAAAA (15)5.40.0054
HypothalamusGGAACCAGCC (4)3.60.0036
HypothalamusAACAAAAAAA (18)1.80.0018
HypothalamusCTACGGGAGT (3)1.80.0018
HypothalamusGACTTTGGAG (3)1.80.0018
HypothalamusGGGAAGAAGA (8)1.80.0018
HypothalamusGGGGGCCCCC (6)1.80.0018
HypothalamusGTGCTGGTGG (12)1.80.0018
E12.5 retinaAACAAAAAAA (18)3.80.0038
E12.5 retinaGGCCAAAGAA (6)3.80.0038
E12.5 retinaGGAACCAGCC (4)1.90.0019
E12.5 retinaGTCAAAAAAA (15)1.90.0019
E14.5 retinaGTCAAAAAAA (15)10.90.0109
E14.5 retinaGCCAAAAAAA (23)9.10.0091
E14.5 retinaAGCAGCGAGG (9)5.50.0055
E14.5 retinaGGAACCAGCC (4)5.50.0055
E14.5 retinaCTCACGCCGC3.60.0036
E14.5 retinaGGGAAGAAGA (8)3.60.0036
E14.5 retinaAACAAAAAAA (18)1.80.0018
E14.5 retinaGAGGTGCTTT (5)1.80.0018
E14.5 retinaGGCAAGAAGA (5)1.80.0018
E14.5 retinaTTTTTTTCTT (9)1.80.0018
E16.5 retinaGTCAAAAAAA (15)10.90.0109
E16.5 retinaGCCAAAAAAA (23)9.10.0091
E16.5 retinaGGAACCAGCC (4)7.20.0072
E16.5 retinaAGCAGCGAGG (9)3.60.0036
E16.5 retinaCTCACGCCGC3.60.0036
E16.5 retinaGACTTTGGAG (3)1.80.0018
E18.5 retinaGTCAAAAAAA (15)30.90.0309
E18.5 retinaGCCAAAAAAA (23)25.50.0255
E18.5 retinaAACAAAAAAA (18)5.50.0055
E18.5 retinaGGGCCCCCTG (6)5.50.0055
E18.5 retinaGACTTTGGAA (6)3.60.0036
E18.5 retinaGGGGGCCCCC (6)3.60.0036
E18.5 retinaCACTTTGGAA (2)1.80.0018
E18.5 retinaGGAACCAGCC (4)1.80.0018
E18.5 retinaGGAAGACAGG (6)1.80.0018
P0.5 retinaGGAACCAGCC (4)7.90.0079
P0.5 retinaGTCAAAAAAA (15)7.90.0079
P0.5 retinaGACTTTGGAA (6)5.90.0059
P0.5 retinaGGGCCCCCTG (6)3.90.0039
P0.5 retinaGTTTTGGCCT (3)3.90.0039
P0.5 retinaAACAAAAAAA (18)20.002
P0.5 retinaGACTTTGGAG (3)20.002
P0.5 retinaGCCAAAAAAA (23)20.002
P0.5 retinaGGCCAAAGAA (6)20.002
P2.5 retinaGTCAAAAAAA (15)10.60.0106
P2.5 retinaGCCAAAAAAA (23)8.80.0088
P2.5 retinaAACAAAAAAA (18)3.50.0035
P2.5 retinaAGCAGCGAGG (9)3.50.0035
P2.5 retinaCTTTATTCCA (4)1.80.0018
P2.5 retinaGACTTTGGAA (6)1.80.0018
P2.5 retinaGCTTTGGGAA (2)1.80.0018
P2.5 retinaGGAACCAGCC (4)1.80.0018
P2.5 retinaGGCCAAAGAA (6)1.80.0018
P2.5 retinaGGGCCCCCTG (6)1.80.0018
P2.5 retinaGGGGGCCCCC (6)1.80.0018
P4.5 retinaGCCAAAAAAA (23)11.90.0119
P4.5 retinaAACAAAAAAA (18)40.004
P4.5 retinaCTACGGGAGT (3)20.002
P4.5 retinaGGAACCAGCC (4)20.002
P4.5 retinaGGCAAGAAGA (5)20.002
P4.5 retinaGGCCAAAGAA (6)20.002
P4.5 retinaGGGCCCCCTG (6)20.002
P4.5 retinaGGGGGCCCCC (6)20.002
P4.5 retinaGTCAAAAAAA (15)20.002
P4.5 retinaTGCAGGCTGG (3)20.002
P4.5 retinaTTCAGCTTTG (8)20.002
P6.5 retinaGCCAAAAAAA (23)11.70.0117
P6.5 retinaGTCAAAAAAA (15)100.01
P6.5 retinaGGGCCCCCTG (6)6.70.0067
P6.5 retinaAGCAGCGAGG (9)1.70.0017
P6.5 retinaGGAACCAGCC (4)1.70.0017
P6.5 retinaGGCCAAAGAA (6)1.70.0017
P10.5 crx- retinaGCCAAAAAAA (23)9.30.0093
P10.5 crx- retinaAGCAGCGAGG (9)5.60.0056
P10.5 crx- retinaAACAAAAAAA (18)3.70.0037
P10.5 crx- retinaGGAAGACAGG (6)3.70.0037
P10.5 crx- retinaGTCAAAAAAA (15)3.70.0037
P10.5 crx- retinaGACTTTGGAA (6)1.90.0019
P10.5 crx- retinaGAGGTGCTTT (5)1.90.0019
P10.5 crx- retinaGTGCTGGTGG (12)1.90.0019
P10.5 crx- retinaTTTTTTTCTT (9)1.90.0019
P10.5 crx+ retinaGCCAAAAAAA (23)17.30.0173
P10.5 crx+ retinaGTCAAAAAAA (15)5.80.0058
P10.5 crx+ retinaGGAACCAGCC (4)3.80.0038
P10.5 crx+ retinaGTGCTGGTGG (12)3.80.0038
P10.5 crx+ retinaAACAAAAAAA (18)1.90.0019
Adult retinalGTGCTGGTGG (12)130.013
Adult retinalGCCAAAAAAA (23)7.40.0074
Adult retinalGGCCAAAGAA (6)7.40.0074
Adult retinalGTCAAAAAAA (15)7.40.0074
Adult retinalACCGATGGCT (2)1.90.0019
Adult retinalCACTTTGGAA (2)1.90.0019
Adult retinalGACTTTGGAA (6)1.90.0019
Adult retinalGAGGTGCTTT (5)1.90.0019
Adult retinalGGAACCAGCC (4)1.90.0019
Adult retinalGGGGGCCCCC (6)1.90.0019
Adult retinalGTTTTGGCCT (3)1.90.0019
ONLTTTTTTTCTT (9)11.50.0115
ONLGTGCTGGTGG (12)5.70.0057
ONLGACTTTGGAA (6)3.80.0038
ONLGCCAAAAAAA (23)3.80.0038
ONLGGAAGACAGG (6)3.80.0038
ONLTTCAGCTTTG (8)3.80.0038
ONLGGAACCAGCC (4)1.90.0019
ONLGGCCAAAGAA (6)1.90.0019
ONLGTCAAAAAAA (15)1.90.0019