Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277735	Col1a1	procollagen, type I, alpha 1	11	11 56.0 cM	12842
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL1A1[collagen, type I, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GACTTTGGAA (2) GGGCCCCCTG (2) GGGGGCCCCC 4.8 0.0048 Cb medulloblastoma CTCACGCCGC GTGACACGGG 13.8 0.0138 P8 GC+1d culture CTCACGCCGC CTTTATTCCA GACCAGCAGA (2) GACTTTGGAA (2) GGGCCCCCTG (2) GGGGGCCCCC 20.6 0.0206 P8 GC+SHH+1d culture CTCACGCCGC CTTTATTCCA GACCAGCAGA (2) GACTTTGGAA (2) GGGCCCCCTG (2) GGGGGCCCCC TTCAGCTTTG (2) 20 0.02 3T3 fibroblasts CTTTATTCCA GACCAGCAGA (2) GACTTTGGAA (2) GGGCCCCCTG (2) TGCAGGCTGG (2) 189.3 0.1893 E15 cortex GACCAGCAGA (2) GACTTTGGAA (2) GGGCCCCCTG (2) 24.6 0.0246 P1 cortex GGGCCCCCTG (2) 9.1 0.0091 Hypothalamus CTCACGCCGC GGGCCCCCTG (2) GGGGGCCCCC 14.4 0.0144 E14.5 retina CTCACGCCGC 3.6 0.0036 E16.5 retina CTCACGCCGC 3.6 0.0036 E18.5 retina GACTTTGGAA (2) GGGCCCCCTG (2) GGGGGCCCCC 12.7 0.0127 P0.5 retina GACTTTGGAA (2) GGGCCCCCTG (2) 9.8 0.0098 P2.5 retina CTTTATTCCA GACTTTGGAA (2) GGGCCCCCTG (2) GGGGGCCCCC 7.2 0.0072 P4.5 retina GGGCCCCCTG (2) GGGGGCCCCC TGCAGGCTGG (2) TTCAGCTTTG (2) 8 0.008 P6.5 retina GGGCCCCCTG (2) 6.7 0.0067 P10.5 crx- retina GACTTTGGAA (2) 1.9 0.0019 Adult retinal GACTTTGGAA (2) GGGGGCCCCC 3.8 0.0038 ONL GACTTTGGAA (2) TTCAGCTTTG (2) 7.6 0.0076