Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.279751	Smarcb1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	10		20587
Gene Ontology	chromatin remodeling | nuclear chromosome | nucleus | regulation of transcription, DNA-dependent
Human Homolog	SMARCB1[SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 133 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTAAAAAAAA (28) 55.5 0.0555 P8 Cb GC TTCAAAAAAA (25) 13.1 0.0131 P8 Cb GC TGCAAAAAAA (21) 4.9 0.0049 P8 Cb GC GAAATGGGGA 1.6 0.0016 P8 Cb GC GTACTTTTAA (2) 1.6 0.0016 P8 Cb GC GTACTTTTTA (2) 1.6 0.0016 P8 Cb GC TACCACCACG (2) 1.6 0.0016 P8 Cb GC TGTTTTTTGT (6) 1.6 0.0016 P8 Cb GC TTCAATTTCA 1.6 0.0016 Cb medulloblastoma GTAAAAAAAA (28) 129.5 0.1295 Cb medulloblastoma TTCAAAAAAA (25) 37 0.037 Cb medulloblastoma TGCAAAAAAA (21) 13.9 0.0139 Cb medulloblastoma GTACTTTTAA (2) 9.2 0.0092 Cb medulloblastoma TGTTTTTTGT (6) 6.9 0.0069 Cb medulloblastoma GTACTTTTTA (2) 4.6 0.0046 Cb medulloblastoma GCGGCGGGGG (8) 2.3 0.0023 Cb medulloblastoma TCAGAGACAA 2.3 0.0023 P8 GC+1d culture GTAAAAAAAA (28) 74.2 0.0742 P8 GC+1d culture TTCAAAAAAA (25) 12.6 0.0126 P8 GC+1d culture TGCAAAAAAA (21) 9.1 0.0091 P8 GC+1d culture GAAATGGGGA 2.3 0.0023 P8 GC+1d culture TGTTTTTTGT (6) 2.3 0.0023 P8 GC+1d culture TTCAATTTCA 2.3 0.0023 P8 GC+1d culture ATGATGATGG (6) 1.1 0.0011 P8 GC+1d culture GTACTTTTAA (2) 1.1 0.0011 P8 GC+SHH+1d culture GTAAAAAAAA (28) 132.3 0.1323 P8 GC+SHH+1d culture TTCAAAAAAA (25) 29.3 0.0293 P8 GC+SHH+1d culture TGCAAAAAAA (21) 15.2 0.0152 P8 GC+SHH+1d culture TGTTTTTTGT (6) 5.9 0.0059 P8 GC+SHH+1d culture TTCAATTTCA 2.3 0.0023 P8 GC+SHH+1d culture GAAATGGGGA 1.2 0.0012 P8 GC+SHH+1d culture GAGGTGGAAA (11) 1.2 0.0012 P8 GC+SHH+1d culture GTACTTTTAA (2) 1.2 0.0012 P8 GC+SHH+1d culture TCAGAGACAA 1.2 0.0012 3T3 fibroblasts GTAAAAAAAA (28) 7 0.007 3T3 fibroblasts ATGATGATGG (6) 3.5 0.0035 E15 cortex GTAAAAAAAA (28) 34.6 0.0346 E15 cortex TTCAAAAAAA (25) 29.7 0.0297 P1 cortex GTAAAAAAAA (28) 36.4 0.0364 P1 cortex ATGATGATGG (6) 4.5 0.0045 P1 cortex TTCAAAAAAA (25) 4.5 0.0045 P1 cortex TTCAATTTCA 4.5 0.0045 P1 cortex TTTGACTTTT (3) 4.5 0.0045 Hypothalamus GTAAAAAAAA (28) 99.6 0.0996 Hypothalamus TGTTTTTTGT (6) 12.7 0.0127 Hypothalamus TGCAAAAAAA (21) 9.1 0.0091 Hypothalamus TTCAAAAAAA (25) 7.2 0.0072 Hypothalamus GAGGTGGAAA (11) 3.6 0.0036 Hypothalamus GTACTTTTAA (2) 1.8 0.0018 Hypothalamus TACCACCACG (2) 1.8 0.0018 Hypothalamus TTCAATTTCA 1.8 0.0018 E12.5 retina GTAAAAAAAA (28) 41.3 0.0413 E12.5 retina TTCAAAAAAA (25) 9.4 0.0094 E12.5 retina GAGGTGGAAA (11) 3.8 0.0038 E12.5 retina TGCAAAAAAA (21) 1.9 0.0019 E14.5 retina GTAAAAAAAA (28) 82 0.082 E14.5 retina TTCAAAAAAA (25) 20 0.02 E14.5 retina TTCAATTTCA 9.1 0.0091 E14.5 retina TGTTTTTTGT (6) 3.6 0.0036 E14.5 retina GAGGTGGAAA (11) 1.8 0.0018 E14.5 retina GCGGCGGGGG (8) 1.8 0.0018 E14.5 retina TGCAAAAAAA (21) 1.8 0.0018 E14.5 retina TTTGACTTTT (3) 1.8 0.0018 E16.5 retina GTAAAAAAAA (28) 68.8 0.0688 E16.5 retina TTCAAAAAAA (25) 9.1 0.0091 E16.5 retina TGCAAAAAAA (21) 5.4 0.0054 E16.5 retina GAGGTGGAAA (11) 3.6 0.0036 E16.5 retina GCGGCGGGGG (8) 1.8 0.0018 E16.5 retina GTACTTTTAA (2) 1.8 0.0018 E16.5 retina GTACTTTTTA (2) 1.8 0.0018 E16.5 retina TGTTTTTTGT (6) 1.8 0.0018 E16.5 retina TTCAATTTCA 1.8 0.0018 E18.5 retina GTAAAAAAAA (28) 189.2 0.1892 E18.5 retina TTCAAAAAAA (25) 36.4 0.0364 E18.5 retina TGCAAAAAAA (21) 20 0.02 E18.5 retina GAGGTGGAAA (11) 1.8 0.0018 E18.5 retina GCGGCGGGGG (8) 1.8 0.0018 E18.5 retina GTAAAAAAAC (5) 1.8 0.0018 E18.5 retina GTACTTTTTA (2) 1.8 0.0018 P0.5 retina GTAAAAAAAA (28) 51 0.051 P0.5 retina TTCAAAAAAA (25) 9.8 0.0098 P0.5 retina TGCAAAAAAA (21) 7.9 0.0079 P0.5 retina GCGGCGGGGG (8) 3.9 0.0039 P0.5 retina GAGGTGGAAA (11) 2 0.002 P0.5 retina TCAGAGACAA 2 0.002 P0.5 retina TGTTTTTTGT (6) 2 0.002 P0.5 retina TTTGACTTTT (3) 2 0.002 P2.5 retina GTAAAAAAAA (28) 103.8 0.1038 P2.5 retina GAGGTGGAAA (11) 8.8 0.0088 P2.5 retina TTCAAAAAAA (25) 7 0.007 P2.5 retina TGTTTTTTGT (6) 5.3 0.0053 P2.5 retina TGCAAAAAAA (21) 3.5 0.0035 P2.5 retina GAAATGGGGA 1.8 0.0018 P2.5 retina TTCAATTTCA 1.8 0.0018 P4.5 retina GTAAAAAAAA (28) 142.7 0.1427 P4.5 retina TTCAAAAAAA (25) 31.7 0.0317 P4.5 retina GAGGTGGAAA (11) 5.9 0.0059 P4.5 retina TGCAAAAAAA (21) 4 0.004 P4.5 retina TTCAATTTCA 4 0.004 P4.5 retina ATGATGATGG (6) 2 0.002 P4.5 retina TGTTTTTTGT (6) 2 0.002 P6.5 retina GTAAAAAAAA (28) 66.7 0.0667 P6.5 retina TTCAAAAAAA (25) 8.3 0.0083 P6.5 retina TGCAAAAAAA (21) 5 0.005 P6.5 retina TTCAATTTCA 3.3 0.0033 P6.5 retina GAGGTGGAAA (11) 1.7 0.0017 P6.5 retina GTAAAAAAAC (5) 1.7 0.0017 P6.5 retina TGTTTTTTGT (6) 1.7 0.0017 P10.5 crx- retina GTAAAAAAAA (28) 26 0.026 P10.5 crx- retina TTCAAAAAAA (25) 5.6 0.0056 P10.5 crx- retina GAGGTGGAAA (11) 3.7 0.0037 P10.5 crx- retina TGTTTTTTGT (6) 3.7 0.0037 P10.5 crx+ retina GTAAAAAAAA (28) 55.8 0.0558 P10.5 crx+ retina TGCAAAAAAA (21) 9.6 0.0096 P10.5 crx+ retina TTCAAAAAAA (25) 9.6 0.0096 P10.5 crx+ retina GTAAAAAAAC (5) 5.8 0.0058 P10.5 crx+ retina ATGATGATGG (6) 1.9 0.0019 P10.5 crx+ retina GAAATGGGGA 1.9 0.0019 P10.5 crx+ retina TGTTTTTTGT (6) 1.9 0.0019 P10.5 crx+ retina TTTGACTTTT (3) 1.9 0.0019 Adult retinal GTAAAAAAAA (28) 22.2 0.0222 Adult retinal TGCAAAAAAA (21) 5.6 0.0056 Adult retinal TTCAAAAAAA (25) 5.6 0.0056 Adult retinal ATGATGATGG (6) 1.9 0.0019 Adult retinal TGTTTTTTGT (6) 1.9 0.0019 ONL GTAAAAAAAA (28) 24.9 0.0249 ONL GTAAAAAAAC (5) 9.6 0.0096 ONL TGCAAAAAAA (21) 7.7 0.0077 ONL TTCAAAAAAA (25) 3.8 0.0038 ONL ATGATGATGG (6) 1.9 0.0019 ONL GAAATGGGGA 1.9 0.0019 ONL TACCACCACG (2) 1.9 0.0019 ONL TGTTTTTTGT (6) 1.9 0.0019