Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.279751	Smarcb1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	10		20587
Gene Ontology	chromatin remodeling | nuclear chromosome | nucleus | regulation of transcription, DNA-dependent
Human Homolog	SMARCB1[SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 63 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTCAAAAAAA (2) 13.1 0.0131 P8 Cb GC GTACTTTTTA 1.6 0.0016 P8 Cb GC TACCACCACG 1.6 0.0016 P8 Cb GC TGTTTTTTGT (3) 1.6 0.0016 P8 Cb GC TTCAATTTCA 1.6 0.0016 Cb medulloblastoma TTCAAAAAAA (2) 37 0.037 Cb medulloblastoma TGTTTTTTGT (3) 6.9 0.0069 Cb medulloblastoma GTACTTTTTA 4.6 0.0046 Cb medulloblastoma GCGGCGGGGG 2.3 0.0023 Cb medulloblastoma TCAGAGACAA 2.3 0.0023 P8 GC+1d culture TTCAAAAAAA (2) 12.6 0.0126 P8 GC+1d culture TGTTTTTTGT (3) 2.3 0.0023 P8 GC+1d culture TTCAATTTCA 2.3 0.0023 P8 GC+SHH+1d culture TTCAAAAAAA (2) 29.3 0.0293 P8 GC+SHH+1d culture TGTTTTTTGT (3) 5.9 0.0059 P8 GC+SHH+1d culture TTCAATTTCA 2.3 0.0023 P8 GC+SHH+1d culture TCAGAGACAA 1.2 0.0012 E15 cortex TTCAAAAAAA (2) 29.7 0.0297 P1 cortex TTCAAAAAAA (2) 4.5 0.0045 P1 cortex TTCAATTTCA 4.5 0.0045 P1 cortex TTTGACTTTT (3) 4.5 0.0045 Hypothalamus TGTTTTTTGT (3) 12.7 0.0127 Hypothalamus TTCAAAAAAA (2) 7.2 0.0072 Hypothalamus TACCACCACG 1.8 0.0018 Hypothalamus TTCAATTTCA 1.8 0.0018 E12.5 retina TTCAAAAAAA (2) 9.4 0.0094 E14.5 retina TTCAAAAAAA (2) 20 0.02 E14.5 retina TTCAATTTCA 9.1 0.0091 E14.5 retina TGTTTTTTGT (3) 3.6 0.0036 E14.5 retina GCGGCGGGGG 1.8 0.0018 E14.5 retina TTTGACTTTT (3) 1.8 0.0018 E16.5 retina TTCAAAAAAA (2) 9.1 0.0091 E16.5 retina GCGGCGGGGG 1.8 0.0018 E16.5 retina GTACTTTTTA 1.8 0.0018 E16.5 retina TGTTTTTTGT (3) 1.8 0.0018 E16.5 retina TTCAATTTCA 1.8 0.0018 E18.5 retina TTCAAAAAAA (2) 36.4 0.0364 E18.5 retina GCGGCGGGGG 1.8 0.0018 E18.5 retina GTACTTTTTA 1.8 0.0018 P0.5 retina TTCAAAAAAA (2) 9.8 0.0098 P0.5 retina GCGGCGGGGG 3.9 0.0039 P0.5 retina TCAGAGACAA 2 0.002 P0.5 retina TGTTTTTTGT (3) 2 0.002 P0.5 retina TTTGACTTTT (3) 2 0.002 P2.5 retina TTCAAAAAAA (2) 7 0.007 P2.5 retina TGTTTTTTGT (3) 5.3 0.0053 P2.5 retina TTCAATTTCA 1.8 0.0018 P4.5 retina TTCAAAAAAA (2) 31.7 0.0317 P4.5 retina TTCAATTTCA 4 0.004 P4.5 retina TGTTTTTTGT (3) 2 0.002 P6.5 retina TTCAAAAAAA (2) 8.3 0.0083 P6.5 retina TTCAATTTCA 3.3 0.0033 P6.5 retina TGTTTTTTGT (3) 1.7 0.0017 P10.5 crx- retina TTCAAAAAAA (2) 5.6 0.0056 P10.5 crx- retina TGTTTTTTGT (3) 3.7 0.0037 P10.5 crx+ retina TTCAAAAAAA (2) 9.6 0.0096 P10.5 crx+ retina TGTTTTTTGT (3) 1.9 0.0019 P10.5 crx+ retina TTTGACTTTT (3) 1.9 0.0019 Adult retinal TTCAAAAAAA (2) 5.6 0.0056 Adult retinal TGTTTTTTGT (3) 1.9 0.0019 ONL TTCAAAAAAA (2) 3.8 0.0038 ONL TACCACCACG 1.9 0.0019 ONL TGTTTTTTGT (3) 1.9 0.0019