Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.279751	Smarcb1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	10		20587
Gene Ontology	chromatin remodeling | nuclear chromosome | nucleus | regulation of transcription, DNA-dependent
Human Homolog	SMARCB1[SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 133 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAATGGGGA GTAAAAAAAA (2) GTACTTTTAA GTACTTTTTA TACCACCACG TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA 83.1 0.0831 Cb medulloblastoma GCGGCGGGGG GTAAAAAAAA (2) GTACTTTTAA GTACTTTTTA TCAGAGACAA TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) 205.7 0.2057 P8 GC+1d culture ATGATGATGG (2) GAAATGGGGA GTAAAAAAAA (2) GTACTTTTAA TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA 105 0.105 P8 GC+SHH+1d culture GAAATGGGGA GAGGTGGAAA (3) GTAAAAAAAA (2) GTACTTTTAA TCAGAGACAA TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA 189.8 0.1898 3T3 fibroblasts ATGATGATGG (2) GTAAAAAAAA (2) 10.5 0.0105 E15 cortex GTAAAAAAAA (2) TTCAAAAAAA (2) 64.3 0.0643 P1 cortex ATGATGATGG (2) GTAAAAAAAA (2) TTCAAAAAAA (2) TTCAATTTCA TTTGACTTTT (3) 54.4 0.0544 Hypothalamus GAGGTGGAAA (3) GTAAAAAAAA (2) GTACTTTTAA TACCACCACG TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA 137.6 0.1376 E12.5 retina GAGGTGGAAA (3) GTAAAAAAAA (2) TGCAAAAAAA (2) TTCAAAAAAA (2) 56.4 0.0564 E14.5 retina GAGGTGGAAA (3) GCGGCGGGGG GTAAAAAAAA (2) TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA TTTGACTTTT (3) 121.9 0.1219 E16.5 retina GAGGTGGAAA (3) GCGGCGGGGG GTAAAAAAAA (2) GTACTTTTAA GTACTTTTTA TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA 95.9 0.0959 E18.5 retina GAGGTGGAAA (3) GCGGCGGGGG GTAAAAAAAA (2) GTAAAAAAAC (2) GTACTTTTTA TGCAAAAAAA (2) TTCAAAAAAA (2) 252.8 0.2528 P0.5 retina GAGGTGGAAA (3) GCGGCGGGGG GTAAAAAAAA (2) TCAGAGACAA TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTTGACTTTT (3) 80.6 0.0806 P2.5 retina GAAATGGGGA GAGGTGGAAA (3) GTAAAAAAAA (2) TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA 132 0.132 P4.5 retina ATGATGATGG (2) GAGGTGGAAA (3) GTAAAAAAAA (2) TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA 192.3 0.1923 P6.5 retina GAGGTGGAAA (3) GTAAAAAAAA (2) GTAAAAAAAC (2) TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTCAATTTCA 88.4 0.0884 P10.5 crx- retina GAGGTGGAAA (3) GTAAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) 39 0.039 P10.5 crx+ retina ATGATGATGG (2) GAAATGGGGA GTAAAAAAAA (2) GTAAAAAAAC (2) TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) TTTGACTTTT (3) 88.4 0.0884 Adult retinal ATGATGATGG (2) GTAAAAAAAA (2) TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) 37.2 0.0372 ONL ATGATGATGG (2) GAAATGGGGA GTAAAAAAAA (2) GTAAAAAAAC (2) TACCACCACG TGCAAAAAAA (2) TGTTTTTTGT (3) TTCAAAAAAA (2) 53.6 0.0536