Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.283339	Prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	12		328110
Human Homolog	PRPF39[PRP39 pre-mRNA processing factor 39 homolog (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACAACATTAA (2) ACACTTTTTG (2) CAGCAAAAAA (2) CTCTGCCTTT 11.3 0.0113 Cb medulloblastoma ACACTTTTTG (2) CAGCAAAAAA (2) CCTTTCTGCG (3) 13.8 0.0138 P8 GC+1d culture ACACTTTTTG (2) AGCTGCAAAA CCTTTCTGCG (3) 10.2 0.0102 P8 GC+SHH+1d culture ACACTTTTAT (3) ACACTTTTTG (2) AGCTGCAAAA CAGCAAAAAA (2) 9.5 0.0095 E15 cortex ACACTTTTTG (2) 4.9 0.0049 P1 cortex ACACTTTTTG (2) 9.1 0.0091 Hypothalamus ACACTTTTTG (2) AGCTGCAAAA CAGCAAAAAA (2) CCTTTCTGCG (3) 12.6 0.0126 E12.5 retina ACAACATTAA (2) ACACTTTTAT (3) ACACTTTTTG (2) CAGCAAAAAA (2) CCTTTCTGCG (3) TAAAACTTAT 19 0.019 E14.5 retina ACACTTTTAT (3) AGCTGCAAAA CAGCAAAAAA (2) CCTTTCTGCG (3) CTCTGCCTTT 16.3 0.0163 E16.5 retina ACACTTTTAT (3) ACACTTTTTG (2) AGCTGCAAAA CCTTTCTGCG (3) CTCTGCCTTT 12.6 0.0126 E18.5 retina ACACTTTTTG (2) AGCTGCAAAA CAGCAAAAAA (2) CCTTTCTGCG (3) TAAAACTTAT 18.1 0.0181 P0.5 retina ACACTTTTTG (2) AGCTGCAAAA CCTTTCTGCG (3) TAAAACTTAT 9.9 0.0099 P2.5 retina ACACTTTTTG (2) CAGCAAAAAA (2) CCTTTCTGCG (3) TAAAACTTAT 19.3 0.0193 P4.5 retina ACACTTTTTG (2) AGCTGCAAAA 7.9 0.0079 P6.5 retina AGCTGCAAAA CAGCAAAAAA (2) CCTTTCTGCG (3) 10 0.01 P10.5 crx- retina ACAACATTAA (2) ACACTTTTTG (2) AGCTGCAAAA CAGCAAAAAA (2) CCTTTCTGCG (3) 20.5 0.0205 P10.5 crx+ retina ACACTTTTTG (2) AGCTGCAAAA CAGCAAAAAA (2) CCTTTCTGCG (3) 28.8 0.0288 Adult retinal ACACTTTTAT (3) AGCTGCAAAA CCTTTCTGCG (3) 14.9 0.0149 ONL AGCTGCAAAA 5.7 0.0057