Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28694	Lsm6	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	8		78651
Gene Ontology	cytoplasm | mRNA catabolism | mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | protein heterodimerization activity | ribonucleoprotein complex | RNA binding | small nucleolar ribonucleoprotein complex
Human Homolog	LSM6[LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 40 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCTGGTG (2) TTACCTCCTT TTGTCCCCTG 31 0.031 Cb medulloblastoma GTGGCTGGTG (2) TTGTCCCCTG 9.2 0.0092 P8 GC+1d culture GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 18.2 0.0182 P8 GC+SHH+1d culture GTGGCTGGTG (2) TTACCTCCTT TTGTCCCCTG 21.1 0.0211 3T3 fibroblasts GTGGCTGGTG (2) 21 0.021 E15 cortex GTGGCTGGTG (2) 14.8 0.0148 P1 cortex GTGGCTGGTG (2) 9.1 0.0091 Hypothalamus GTGGCTGGTG (2) 12.7 0.0127 E12.5 retina GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 26.3 0.0263 E14.5 retina GTGGCTGGTG (2) 21.9 0.0219 E16.5 retina GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 32.5 0.0325 E18.5 retina GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 27.2 0.0272 P0.5 retina GTGGCTGGTG (2) TTGTCCCCTG 23.6 0.0236 P2.5 retina GTGGCTGGTG (2) 21.1 0.0211 P4.5 retina GTGGCTGGTG (2) 21.8 0.0218 P6.5 retina GTGGCTGGTG (2) TTGTCCCCTG 18.3 0.0183 P10.5 crx- retina GTGGCTGGTG (2) TTGTCCCCTG 7.5 0.0075 P10.5 crx+ retina GTGGCTGGTG (2) TTGTCCCCTG 15.4 0.0154 Adult retinal GTGGCTGGTG (2) TTGTCCCCTG 13 0.013 ONL GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 13.4 0.0134