Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291928	Catnb	catenin beta	9	9 F4 (9 72.0 cM)	12387
Gene Ontology	adherens junction | alpha-catenin binding | apical part of cell | basolateral plasma membrane | cadherin binding | cell adhesion | cell growth and/or maintenance | cell-cell adherens junction | cytoplasm | cytoskeleton | DNA binding | ectoderm development | gastrulation (sensu Mammalia) | heart development | hemopoiesis | intercellular junction | lamellipodium | lung development | membrane | membrane fraction | nucleus | patterning of blood vessels | protein binding | proximal/distal pattern formation | regulation of cell differentiation | regulation of cell proliferation | regulation of transcription | regulation of transcription, DNA-dependent | structural molecule activity | synapse organization and biogenesis | synaptic transmission | transcription | transcription coactivator activity | transcription factor activity | transcription factor complex | Wnt receptor signaling pathway
Human Homolog	CTNNB1[catenin (cadherin-associated protein), beta 1, 88kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 13 In Situ Hybridization Images

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SAGE Tags

Total 169 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TTTTTGAACA (4) 13.1 0.0131 P8 Cb GC AAGATGCACA (4) 8.2 0.0082 P8 Cb GC TGGTGATATT (5) 3.3 0.0033 P8 Cb GC AAAATATCCA 1.6 0.0016 P8 Cb GC AAATAGATCC 1.6 0.0016 P8 Cb GC AGGTCCTGGG (4) 1.6 0.0016 P8 Cb GC CCTGTCATCC (8) 1.6 0.0016 P8 Cb GC CTTGCTCGGG (3) 1.6 0.0016 P8 Cb GC GATGGCTGCC (2) 1.6 0.0016 P8 Cb GC GATGGGCTGC (2) 1.6 0.0016 P8 Cb GC GCCAACTCCA (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TTTTTGAACA (4) 11.6 0.0116 Cb medulloblastoma AAATAAATCT (5) 2.3 0.0023 Cb medulloblastoma AAATAGATCC 2.3 0.0023 Cb medulloblastoma AAGATGCACA (4) 2.3 0.0023 Cb medulloblastoma CAAAAACAAA (6) 2.3 0.0023 Cb medulloblastoma TGCCAGGAGA (6) 2.3 0.0023 Cb medulloblastoma TGGTGATATT (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TTTTTGAACA (4) 18.3 0.0183 P8 GC+1d culture GATGGCTGCC (2) 4.6 0.0046 P8 GC+1d culture TGGTGATATT (5) 4.6 0.0046 P8 GC+1d culture AAATATATGC (2) 3.4 0.0034 P8 GC+1d culture AAGATGCACA (4) 2.3 0.0023 P8 GC+1d culture GAATTTCAAG (4) 2.3 0.0023 P8 GC+1d culture AAATAAATCT (5) 1.1 0.0011 P8 GC+1d culture CCTGTCATCC (8) 1.1 0.0011 P8 GC+1d culture CTTGCTCGGG (3) 1.1 0.0011 P8 GC+1d culture GCCTCTGATA (3) 1.1 0.0011 P8 GC+1d culture TCTGTCTGTC (15) 1.1 0.0011 P8 GC+1d culture TGCCAGGAGA (6) 1.1 0.0011 P8 GC+1d culture TGTGGAAGTT (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TTTTTGAACA (4) 14.1 0.0141 P8 GC+SHH+1d culture AAATAAATCT (5) 3.5 0.0035 P8 GC+SHH+1d culture AAATAGATCC 3.5 0.0035 P8 GC+SHH+1d culture GATGGCTGCC (2) 3.5 0.0035 P8 GC+SHH+1d culture CCTGTCATCC (8) 2.3 0.0023 P8 GC+SHH+1d culture GAATTTCAAG (4) 2.3 0.0023 P8 GC+SHH+1d culture TGAAAAAAGA (7) 2.3 0.0023 P8 GC+SHH+1d culture TGGTGATATT (5) 2.3 0.0023 P8 GC+SHH+1d culture AAATAGATCA 1.2 0.0012 P8 GC+SHH+1d culture AAGATGCACA (4) 1.2 0.0012 P8 GC+SHH+1d culture CAAAAACAAA (6) 1.2 0.0012 P8 GC+SHH+1d culture TGTGGAAGTT (3) 1.2 0.0012 P8 GC+SHH+1d culture TTCAACTCCA (6) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts AAATAGATCC 3.5 0.0035 3T3 fibroblasts TTTTTGAACA (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GATGGGCTGC (2) 4.9 0.0049 E15 cortex TGAAAAAAGA (7) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TTTTTGAACA (4) 9.1 0.0091 P1 cortex AAAATATCCA 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TTTTTGAACA (4) 12.7 0.0127 Hypothalamus CTTGCTCGGG (3) 3.6 0.0036 Hypothalamus GATGGCTGCC (2) 3.6 0.0036 Hypothalamus AAAATATCCA 1.8 0.0018 Hypothalamus AAATAGATCC 1.8 0.0018 Hypothalamus AAATATATGC (2) 1.8 0.0018 Hypothalamus GGTTGGGGGG (2) 1.8 0.0018 Hypothalamus TGTGGAAGTT (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TTTTTGAACA (4) 26.3 0.0263 E12.5 retina AAATAGATCC 15 0.015 E12.5 retina CTTGCTCGGG (3) 3.8 0.0038 E12.5 retina TGGTGATATT (5) 3.8 0.0038 E12.5 retina CAAAAACAAA (6) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TTTTTGAACA (4) 21.9 0.0219 E14.5 retina GATGGCTGCC (2) 3.6 0.0036 E14.5 retina AAATAAATCT (5) 1.8 0.0018 E14.5 retina AAATAGATCC 1.8 0.0018 E14.5 retina CCTGTCATCC (8) 1.8 0.0018 E14.5 retina GCCAACTCCA (2) 1.8 0.0018 E14.5 retina GCTCGAAAGG 1.8 0.0018 E14.5 retina TGGTGATATT (5) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TTTTTGAACA (4) 9.1 0.0091 E16.5 retina AAATAGATCC 3.6 0.0036 E16.5 retina GATGGCTGCC (2) 3.6 0.0036 E16.5 retina GATGGGCTGC (2) 3.6 0.0036 E16.5 retina TGGTGATATT (5) 3.6 0.0036 E16.5 retina AAATAAATCT (5) 1.8 0.0018 E16.5 retina GCTCGAAAGG 1.8 0.0018 E16.5 retina TGTGGAAGTT (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TTTTTGAACA (4) 14.6 0.0146 E18.5 retina AAATAGATCC 5.5 0.0055 E18.5 retina AAATAAATCT (5) 1.8 0.0018 E18.5 retina GATGGCTGCC (2) 1.8 0.0018 E18.5 retina GATGGGCTGC (2) 1.8 0.0018 E18.5 retina GCCAACTCCA (2) 1.8 0.0018 E18.5 retina TGATGATCAA (2) 1.8 0.0018 E18.5 retina TGGTGATATT (5) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TTTTTGAACA (4) 23.6 0.0236 P0.5 retina TGTGGAAGTT (3) 5.9 0.0059 P0.5 retina GAATTTCAAG (4) 3.9 0.0039 P0.5 retina AAATAGATCC 2 0.002 P0.5 retina GATGGCTGCC (2) 2 0.002 P0.5 retina TCTGTCTGTC (15) 2 0.002 P0.5 retina TGGTGATATT (5) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TTTTTGAACA (4) 19.4 0.0194 P2.5 retina AAATAGATCC 8.8 0.0088 P2.5 retina TGGTGATATT (5) 7 0.007 P2.5 retina GGTTGGGGGG (2) 3.5 0.0035 P2.5 retina AAATAAATCT (5) 1.8 0.0018 P2.5 retina AAATAGATCA 1.8 0.0018 P2.5 retina CCTGTCATCC (8) 1.8 0.0018 P2.5 retina GAATTTCAAG (4) 1.8 0.0018 P2.5 retina GATGGCTGCC (2) 1.8 0.0018 P2.5 retina TCTGTCTGTC (15) 1.8 0.0018 P2.5 retina TGCCAGGAGA (6) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TTTTTGAACA (4) 7.9 0.0079 P4.5 retina AAATAAATCT (5) 5.9 0.0059 P4.5 retina GATGGCTGCC (2) 5.9 0.0059 P4.5 retina AAATAGATCC 4 0.004 P4.5 retina AAATAGATCA 2 0.002 P4.5 retina CTTGCTCGGG (3) 2 0.002 P4.5 retina GCTCGAAAGG 2 0.002 P4.5 retina TTCAACTCCA (6) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TTTTTGAACA (4) 11.7 0.0117 P6.5 retina AAATAAATCT (5) 3.3 0.0033 P6.5 retina AAATAGATCC 3.3 0.0033 P6.5 retina AGGTCCTGGG (4) 1.7 0.0017 P6.5 retina GATGGCTGCC (2) 1.7 0.0017 P6.5 retina TCTGTCTGTC (15) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TTTTTGAACA (4) 16.7 0.0167 P10.5 crx- retina CCTGTCATCC (8) 7.4 0.0074 P10.5 crx- retina TGATGATCAA (2) 3.7 0.0037 P10.5 crx- retina AAAATATCCA 1.9 0.0019 P10.5 crx- retina GCCTCTGATA (3) 1.9 0.0019 P10.5 crx- retina TGGTGATATT (5) 1.9 0.0019 P10.5 crx- retina TTCAACTCCA (6) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TTTTTGAACA (4) 9.6 0.0096 P10.5 crx+ retina AAATAGATCC 7.7 0.0077 P10.5 crx+ retina CCTGTCATCC (8) 5.8 0.0058 P10.5 crx+ retina GATGGCTGCC (2) 3.8 0.0038 P10.5 crx+ retina TGTGGAAGTT (3) 3.8 0.0038 P10.5 crx+ retina AAAATATCCA 1.9 0.0019 P10.5 crx+ retina TCTGTCTGTC (15) 1.9 0.0019 P10.5 crx+ retina TGGTGATATT (5) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TGGTGATATT (5) 7.4 0.0074 Adult retinal TTTTTGAACA (4) 5.6 0.0056 Adult retinal AAAATATCCA 1.9 0.0019 Adult retinal AAGATGCACA (4) 1.9 0.0019 Adult retinal AGGTCCTGGG (4) 1.9 0.0019 Adult retinal CTTGCTCGGG (3) 1.9 0.0019 Adult retinal GCCTCTGATA (3) 1.9 0.0019 Adult retinal TCTGTCTGTC (15) 1.9 0.0019 Adult retinal TGCCAGGAGA (6) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TGTGGAAGTT (3) 3.8 0.0038 ONL TTTTTGAACA (4) 3.8 0.0038 ONL AAATAAATCT (5) 1.9 0.0019 ONL GAATTTCAAG (4) 1.9 0.0019 ONL GATGGCTGCC (2) 1.9 0.0019 ONL TTCAACTCCA (6) 1.9 0.0019