Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.298728	Nisch	nischarin	14		64652
Gene Ontology	actin cytoskeleton organization and biogenesis | cytosol | integrin binding | negative regulation of cell migration | RAC protein signal transduction | receptor activity
Human Homolog	NISCH[nischarin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 167 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACTGATTTA (4) 26.1 0.0261 P8 Cb GC GGTCCAAGAG 21.2 0.0212 P8 Cb GC ACTCGGATGC (3) 13.1 0.0131 P8 Cb GC AGTTCAAGGC (12) 3.3 0.0033 P8 Cb GC CAACAAAAGC (2) 3.3 0.0033 P8 Cb GC TCAGGATTCA 3.3 0.0033 P8 Cb GC AGATCTGACA 1.6 0.0016 P8 Cb GC GCAAGCACTG (4) 1.6 0.0016 P8 Cb GC GTGGCGCCTG 1.6 0.0016 Cb medulloblastoma CACTGATTTA (4) 39.3 0.0393 Cb medulloblastoma GGTCCAAGAG 27.7 0.0277 Cb medulloblastoma ACTCGGATGC (3) 13.9 0.0139 Cb medulloblastoma ACCTGGGAAC (3) 2.3 0.0023 Cb medulloblastoma GCAAGCACTG (4) 2.3 0.0023 Cb medulloblastoma GGGAGTGTCA (3) 2.3 0.0023 P8 GC+1d culture CACTGATTTA (4) 45.7 0.0457 P8 GC+1d culture GGTCCAAGAG 28.5 0.0285 P8 GC+1d culture ACTCGGATGC (3) 12.6 0.0126 P8 GC+1d culture GAAGGAAGTG (5) 2.3 0.0023 P8 GC+1d culture AATGCAGAGG (2) 1.1 0.0011 P8 GC+1d culture ACCTGGGAAC (3) 1.1 0.0011 P8 GC+1d culture AGTTCAAGGC (12) 1.1 0.0011 P8 GC+1d culture TGTGAGCCAT 1.1 0.0011 P8 GC+1d culture TGTGCAGCCC (3) 1.1 0.0011 P8 GC+SHH+1d culture CACTGATTTA (4) 44.5 0.0445 P8 GC+SHH+1d culture GGTCCAAGAG 38.6 0.0386 P8 GC+SHH+1d culture ACTCGGATGC (3) 8.2 0.0082 P8 GC+SHH+1d culture CCCAAAAAAA (19) 3.5 0.0035 P8 GC+SHH+1d culture AGATCTGACA 1.2 0.0012 P8 GC+SHH+1d culture AGTTCAAGGC (12) 1.2 0.0012 P8 GC+SHH+1d culture ATTTCTCTTC (4) 1.2 0.0012 P8 GC+SHH+1d culture CAACAAAAGC (2) 1.2 0.0012 P8 GC+SHH+1d culture CACTCACACA (5) 1.2 0.0012 P8 GC+SHH+1d culture GAAGGAAGTG (5) 1.2 0.0012 P8 GC+SHH+1d culture GGCGGCGCTG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGTGAGCCAT 1.2 0.0012 3T3 fibroblasts GGTCCAAGAG 28 0.028 3T3 fibroblasts ACTCGGATGC (3) 10.5 0.0105 3T3 fibroblasts AGATCTGACA 3.5 0.0035 3T3 fibroblasts CACTGATTTA (4) 3.5 0.0035 E15 cortex GGTCCAAGAG 19.8 0.0198 E15 cortex CACTGATTTA (4) 14.8 0.0148 E15 cortex ACTCGGATGC (3) 9.9 0.0099 E15 cortex AATGCAGAGG (2) 4.9 0.0049 E15 cortex AGTTCAAGGC (12) 4.9 0.0049 E15 cortex CACTCACACA (5) 4.9 0.0049 E15 cortex CCCAAAAAAA (19) 4.9 0.0049 E15 cortex GTGGCGCCTG 4.9 0.0049 E15 cortex TCAGGATTCA 4.9 0.0049 P1 cortex CACTGATTTA (4) 27.3 0.0273 P1 cortex GGTCCAAGAG 9.1 0.0091 P1 cortex ACTCGGATGC (3) 4.5 0.0045 P1 cortex AGTTCAAGGC (12) 4.5 0.0045 Hypothalamus CACTGATTTA (4) 58 0.058 Hypothalamus ACTCGGATGC (3) 27.2 0.0272 Hypothalamus GGTCCAAGAG 12.7 0.0127 Hypothalamus GGCGGCGCTG (3) 3.6 0.0036 Hypothalamus AAAGCAGAAC (5) 1.8 0.0018 Hypothalamus ATTTCTCTTC (4) 1.8 0.0018 Hypothalamus CCACTTCAGA (2) 1.8 0.0018 Hypothalamus GAAGGAAGTG (5) 1.8 0.0018 Hypothalamus TGTGCAGCCC (3) 1.8 0.0018 E12.5 retina GGTCCAAGAG 54.4 0.0544 E12.5 retina CACTGATTTA (4) 28.2 0.0282 E12.5 retina AGATCTGACA 3.8 0.0038 E12.5 retina ACTCGGATGC (3) 1.9 0.0019 E12.5 retina AGTTCAAGGC (12) 1.9 0.0019 E12.5 retina CACTCACACA (5) 1.9 0.0019 E14.5 retina CACTGATTTA (4) 31 0.031 E14.5 retina GGTCCAAGAG 27.3 0.0273 E14.5 retina ACTCGGATGC (3) 3.6 0.0036 E14.5 retina AAAGCAGAAC (5) 1.8 0.0018 E14.5 retina ACCTGGGAAC (3) 1.8 0.0018 E14.5 retina CAACAAAAGC (2) 1.8 0.0018 E16.5 retina CACTGATTTA (4) 38 0.038 E16.5 retina GGTCCAAGAG 23.5 0.0235 E16.5 retina ACTCGGATGC (3) 14.5 0.0145 E16.5 retina AGTTCAAGGC (12) 3.6 0.0036 E16.5 retina AATGCAGAGG (2) 1.8 0.0018 E16.5 retina ACCTGGGAAC (3) 1.8 0.0018 E16.5 retina ATTTCTCTTC (4) 1.8 0.0018 E16.5 retina CAACAAAAGC (2) 1.8 0.0018 E16.5 retina CCACTTCAGA (2) 1.8 0.0018 E16.5 retina CCCAAAAAAA (19) 1.8 0.0018 E16.5 retina GCAAGCACTG (4) 1.8 0.0018 E16.5 retina TGTGAGCCAT 1.8 0.0018 E18.5 retina CACTGATTTA (4) 30.9 0.0309 E18.5 retina GGTCCAAGAG 20 0.02 E18.5 retina ACTCGGATGC (3) 9.1 0.0091 E18.5 retina CCCAAAAAAA (19) 3.6 0.0036 E18.5 retina TGTGAGCCAT 3.6 0.0036 E18.5 retina AGATCTGACA 1.8 0.0018 E18.5 retina AGTTCAAGGC (12) 1.8 0.0018 E18.5 retina GCAGCAGGAA (3) 1.8 0.0018 E18.5 retina GGCGGCGCTG (3) 1.8 0.0018 P0.5 retina CACTGATTTA (4) 31.4 0.0314 P0.5 retina GGTCCAAGAG 23.6 0.0236 P0.5 retina ACTCGGATGC (3) 7.9 0.0079 P0.5 retina AGTTCAAGGC (12) 3.9 0.0039 P0.5 retina GCAGCAGGAA (3) 3.9 0.0039 P0.5 retina AGATCTGACA 2 0.002 P0.5 retina CAACAAAAGC (2) 2 0.002 P0.5 retina CACTCACACA (5) 2 0.002 P0.5 retina CCCAAAAAAA (19) 2 0.002 P0.5 retina GGGAGTGTCA (3) 2 0.002 P0.5 retina GTGGCGCCTG 2 0.002 P0.5 retina TCAGGATTCA 2 0.002 P0.5 retina TGTGAGCCAT 2 0.002 P2.5 retina GGTCCAAGAG 56.3 0.0563 P2.5 retina CACTGATTTA (4) 37 0.037 P2.5 retina AGTTCAAGGC (12) 7 0.007 P2.5 retina ACCTGGGAAC (3) 1.8 0.0018 P2.5 retina ACTCGGATGC (3) 1.8 0.0018 P2.5 retina CAACAAAAGC (2) 1.8 0.0018 P2.5 retina CCCAAAAAAA (19) 1.8 0.0018 P2.5 retina GGCGGCGCTG (3) 1.8 0.0018 P4.5 retina GGTCCAAGAG 55.5 0.0555 P4.5 retina CACTGATTTA (4) 41.6 0.0416 P4.5 retina ACTCGGATGC (3) 5.9 0.0059 P4.5 retina AGTTCAAGGC (12) 4 0.004 P4.5 retina CCACTTCAGA (2) 2 0.002 P4.5 retina CCCAAAAAAA (19) 2 0.002 P4.5 retina TGTGAGCCAT 2 0.002 P6.5 retina CACTGATTTA (4) 56.7 0.0567 P6.5 retina GGTCCAAGAG 40 0.04 P6.5 retina AGTTCAAGGC (12) 5 0.005 P6.5 retina CCCAAAAAAA (19) 3.3 0.0033 P6.5 retina TGTGAGCCAT 3.3 0.0033 P6.5 retina AATGCAGAGG (2) 1.7 0.0017 P6.5 retina ACCTGGGAAC (3) 1.7 0.0017 P6.5 retina ACTCGGATGC (3) 1.7 0.0017 P6.5 retina ATTTCTCTTC (4) 1.7 0.0017 P6.5 retina GCAGCAGGAA (3) 1.7 0.0017 P6.5 retina GTGGCGCCTG 1.7 0.0017 P10.5 crx- retina ACTCGGATGC (3) 57.6 0.0576 P10.5 crx- retina CACTGATTTA (4) 37.2 0.0372 P10.5 crx- retina GGTCCAAGAG 26 0.026 P10.5 crx- retina ATTTCTCTTC (4) 1.9 0.0019 P10.5 crx- retina GAAGGAAGTG (5) 1.9 0.0019 P10.5 crx- retina GCAGCAGGAA (3) 1.9 0.0019 P10.5 crx- retina TGTGAGCCAT 1.9 0.0019 P10.5 crx+ retina CACTGATTTA (4) 46.1 0.0461 P10.5 crx+ retina GGTCCAAGAG 32.7 0.0327 P10.5 crx+ retina ACTCGGATGC (3) 28.8 0.0288 P10.5 crx+ retina AATGCAGAGG (2) 1.9 0.0019 P10.5 crx+ retina ACCTGGGAAC (3) 1.9 0.0019 P10.5 crx+ retina GGGAGTGTCA (3) 1.9 0.0019 Adult retinal GGTCCAAGAG 31.5 0.0315 Adult retinal ACTCGGATGC (3) 16.7 0.0167 Adult retinal CACTGATTTA (4) 16.7 0.0167 Adult retinal AAAGCAGAAC (5) 3.7 0.0037 Adult retinal ACCTGGGAAC (3) 1.9 0.0019 Adult retinal ATTTCTCTTC (4) 1.9 0.0019 Adult retinal CCCAAAAAAA (19) 1.9 0.0019 Adult retinal TGTGCAGCCC (3) 1.9 0.0019 ONL GGTCCAAGAG 13.4 0.0134 ONL ATTTCTCTTC (4) 5.7 0.0057 ONL CACTCACACA (5) 5.7 0.0057 ONL CACTGATTTA (4) 5.7 0.0057 ONL ACTCGGATGC (3) 3.8 0.0038 ONL AAAGCAGAAC (5) 1.9 0.0019 ONL AGTTCAAGGC (12) 1.9 0.0019 ONL CCCAAAAAAA (19) 1.9 0.0019 ONL GAAGGAAGTG (5) 1.9 0.0019 ONL TCAGGATTCA 1.9 0.0019 ONL TGTGAGCCAT 1.9 0.0019 ONL TGTGCAGCCC (3) 1.9 0.0019