Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.298728	Nisch	nischarin	14		64652
Gene Ontology	actin cytoskeleton organization and biogenesis | cytosol | integrin binding | negative regulation of cell migration | RAC protein signal transduction | receptor activity
Human Homolog	NISCH[nischarin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGTCCAAGAG 21.2 0.0212 P8 Cb GC AGTTCAAGGC (2) 3.3 0.0033 P8 Cb GC TCAGGATTCA 3.3 0.0033 P8 Cb GC AGATCTGACA 1.6 0.0016 P8 Cb GC GCAAGCACTG (2) 1.6 0.0016 P8 Cb GC GTGGCGCCTG 1.6 0.0016 Cb medulloblastoma GGTCCAAGAG 27.7 0.0277 Cb medulloblastoma GCAAGCACTG (2) 2.3 0.0023 Cb medulloblastoma GGGAGTGTCA (3) 2.3 0.0023 P8 GC+1d culture GGTCCAAGAG 28.5 0.0285 P8 GC+1d culture AGTTCAAGGC (2) 1.1 0.0011 P8 GC+SHH+1d culture GGTCCAAGAG 38.6 0.0386 P8 GC+SHH+1d culture CCCAAAAAAA (2) 3.5 0.0035 P8 GC+SHH+1d culture AGATCTGACA 1.2 0.0012 P8 GC+SHH+1d culture AGTTCAAGGC (2) 1.2 0.0012 P8 GC+SHH+1d culture CACTCACACA (2) 1.2 0.0012 3T3 fibroblasts GGTCCAAGAG 28 0.028 3T3 fibroblasts AGATCTGACA 3.5 0.0035 E15 cortex GGTCCAAGAG 19.8 0.0198 E15 cortex AGTTCAAGGC (2) 4.9 0.0049 E15 cortex CACTCACACA (2) 4.9 0.0049 E15 cortex CCCAAAAAAA (2) 4.9 0.0049 E15 cortex GTGGCGCCTG 4.9 0.0049 E15 cortex TCAGGATTCA 4.9 0.0049 P1 cortex GGTCCAAGAG 9.1 0.0091 P1 cortex AGTTCAAGGC (2) 4.5 0.0045 Hypothalamus GGTCCAAGAG 12.7 0.0127 Hypothalamus AAAGCAGAAC (2) 1.8 0.0018 Hypothalamus CCACTTCAGA 1.8 0.0018 E12.5 retina GGTCCAAGAG 54.4 0.0544 E12.5 retina AGATCTGACA 3.8 0.0038 E12.5 retina AGTTCAAGGC (2) 1.9 0.0019 E12.5 retina CACTCACACA (2) 1.9 0.0019 E14.5 retina GGTCCAAGAG 27.3 0.0273 E14.5 retina AAAGCAGAAC (2) 1.8 0.0018 E16.5 retina GGTCCAAGAG 23.5 0.0235 E16.5 retina AGTTCAAGGC (2) 3.6 0.0036 E16.5 retina CCACTTCAGA 1.8 0.0018 E16.5 retina CCCAAAAAAA (2) 1.8 0.0018 E16.5 retina GCAAGCACTG (2) 1.8 0.0018 E18.5 retina GGTCCAAGAG 20 0.02 E18.5 retina CCCAAAAAAA (2) 3.6 0.0036 E18.5 retina AGATCTGACA 1.8 0.0018 E18.5 retina AGTTCAAGGC (2) 1.8 0.0018 P0.5 retina GGTCCAAGAG 23.6 0.0236 P0.5 retina AGTTCAAGGC (2) 3.9 0.0039 P0.5 retina AGATCTGACA 2 0.002 P0.5 retina CACTCACACA (2) 2 0.002 P0.5 retina CCCAAAAAAA (2) 2 0.002 P0.5 retina GGGAGTGTCA (3) 2 0.002 P0.5 retina GTGGCGCCTG 2 0.002 P0.5 retina TCAGGATTCA 2 0.002 P2.5 retina GGTCCAAGAG 56.3 0.0563 P2.5 retina AGTTCAAGGC (2) 7 0.007 P2.5 retina CCCAAAAAAA (2) 1.8 0.0018 P4.5 retina GGTCCAAGAG 55.5 0.0555 P4.5 retina AGTTCAAGGC (2) 4 0.004 P4.5 retina CCACTTCAGA 2 0.002 P4.5 retina CCCAAAAAAA (2) 2 0.002 P6.5 retina GGTCCAAGAG 40 0.04 P6.5 retina AGTTCAAGGC (2) 5 0.005 P6.5 retina CCCAAAAAAA (2) 3.3 0.0033 P6.5 retina GTGGCGCCTG 1.7 0.0017 P10.5 crx- retina GGTCCAAGAG 26 0.026 P10.5 crx+ retina GGTCCAAGAG 32.7 0.0327 P10.5 crx+ retina GGGAGTGTCA (3) 1.9 0.0019 Adult retinal GGTCCAAGAG 31.5 0.0315 Adult retinal AAAGCAGAAC (2) 3.7 0.0037 Adult retinal CCCAAAAAAA (2) 1.9 0.0019 ONL GGTCCAAGAG 13.4 0.0134 ONL CACTCACACA (2) 5.7 0.0057 ONL AAAGCAGAAC (2) 1.9 0.0019 ONL AGTTCAAGGC (2) 1.9 0.0019 ONL CCCAAAAAAA (2) 1.9 0.0019 ONL TCAGGATTCA 1.9 0.0019