Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.298728	Nisch	nischarin	14		64652
Gene Ontology	actin cytoskeleton organization and biogenesis | cytosol | integrin binding | negative regulation of cell migration | RAC protein signal transduction | receptor activity
Human Homolog	NISCH[nischarin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 167 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACTCGGATGC AGATCTGACA AGTTCAAGGC (2) CAACAAAAGC CACTGATTTA GCAAGCACTG (2) GGTCCAAGAG GTGGCGCCTG TCAGGATTCA 75.1 0.0751 Cb medulloblastoma ACCTGGGAAC ACTCGGATGC CACTGATTTA GCAAGCACTG (2) GGGAGTGTCA (3) GGTCCAAGAG 87.8 0.0878 P8 GC+1d culture AATGCAGAGG ACCTGGGAAC ACTCGGATGC AGTTCAAGGC (2) CACTGATTTA GAAGGAAGTG GGTCCAAGAG TGTGAGCCAT TGTGCAGCCC (2) 94.6 0.0946 P8 GC+SHH+1d culture ACTCGGATGC AGATCTGACA AGTTCAAGGC (2) ATTTCTCTTC (3) CAACAAAAGC CACTCACACA (2) CACTGATTTA CCCAAAAAAA (2) GAAGGAAGTG GGCGGCGCTG GGTCCAAGAG TGTGAGCCAT 104.4 0.1044 3T3 fibroblasts ACTCGGATGC AGATCTGACA CACTGATTTA GGTCCAAGAG 45.5 0.0455 E15 cortex AATGCAGAGG ACTCGGATGC AGTTCAAGGC (2) CACTCACACA (2) CACTGATTTA CCCAAAAAAA (2) GGTCCAAGAG GTGGCGCCTG TCAGGATTCA 73.9 0.0739 P1 cortex ACTCGGATGC AGTTCAAGGC (2) CACTGATTTA GGTCCAAGAG 45.4 0.0454 Hypothalamus AAAGCAGAAC (2) ACTCGGATGC ATTTCTCTTC (3) CACTGATTTA CCACTTCAGA GAAGGAAGTG GGCGGCGCTG GGTCCAAGAG TGTGCAGCCC (2) 110.5 0.1105 E12.5 retina ACTCGGATGC AGATCTGACA AGTTCAAGGC (2) CACTCACACA (2) CACTGATTTA GGTCCAAGAG 92.1 0.0921 E14.5 retina AAAGCAGAAC (2) ACCTGGGAAC ACTCGGATGC CAACAAAAGC CACTGATTTA GGTCCAAGAG 67.3 0.0673 E16.5 retina AATGCAGAGG ACCTGGGAAC ACTCGGATGC AGTTCAAGGC (2) ATTTCTCTTC (3) CAACAAAAGC CACTGATTTA CCACTTCAGA CCCAAAAAAA (2) GCAAGCACTG (2) GGTCCAAGAG TGTGAGCCAT 94 0.094 E18.5 retina ACTCGGATGC AGATCTGACA AGTTCAAGGC (2) CACTGATTTA CCCAAAAAAA (2) GCAGCAGGAA GGCGGCGCTG GGTCCAAGAG TGTGAGCCAT 74.4 0.0744 P0.5 retina ACTCGGATGC AGATCTGACA AGTTCAAGGC (2) CAACAAAAGC CACTCACACA (2) CACTGATTTA CCCAAAAAAA (2) GCAGCAGGAA GGGAGTGTCA (3) GGTCCAAGAG GTGGCGCCTG TCAGGATTCA TGTGAGCCAT 86.7 0.0867 P2.5 retina ACCTGGGAAC ACTCGGATGC AGTTCAAGGC (2) CAACAAAAGC CACTGATTTA CCCAAAAAAA (2) GGCGGCGCTG GGTCCAAGAG 109.3 0.1093 P4.5 retina ACTCGGATGC AGTTCAAGGC (2) CACTGATTTA CCACTTCAGA CCCAAAAAAA (2) GGTCCAAGAG TGTGAGCCAT 113 0.113 P6.5 retina AATGCAGAGG ACCTGGGAAC ACTCGGATGC AGTTCAAGGC (2) ATTTCTCTTC (3) CACTGATTTA CCCAAAAAAA (2) GCAGCAGGAA GGTCCAAGAG GTGGCGCCTG TGTGAGCCAT 118.5 0.1185 P10.5 crx- retina ACTCGGATGC ATTTCTCTTC (3) CACTGATTTA GAAGGAAGTG GCAGCAGGAA GGTCCAAGAG TGTGAGCCAT 128.4 0.1284 P10.5 crx+ retina AATGCAGAGG ACCTGGGAAC ACTCGGATGC CACTGATTTA GGGAGTGTCA (3) GGTCCAAGAG 113.3 0.1133 Adult retinal AAAGCAGAAC (2) ACCTGGGAAC ACTCGGATGC ATTTCTCTTC (3) CACTGATTTA CCCAAAAAAA (2) GGTCCAAGAG TGTGCAGCCC (2) 76.2 0.0762 ONL AAAGCAGAAC (2) ACTCGGATGC AGTTCAAGGC (2) ATTTCTCTTC (3) CACTCACACA (2) CACTGATTTA CCCAAAAAAA (2) GAAGGAAGTG GGTCCAAGAG TCAGGATTCA TGTGAGCCAT TGTGCAGCCC (2) 47.6 0.0476