Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30478	Rpl39	ribosomal protein L39	X		67248
Gene Ontology	cytosolic large ribosomal subunit (sensu Eukarya) | intracellular | protein biosynthesis | ribosome | RNA binding | structural constituent of ribosome
Human Homolog	RPL39[ribosomal protein L39]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 121 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TCTTCTCACA (5) 32.6 0.0326 P8 Cb GC TCAAAAAAAA (60) 17.9 0.0179 P8 Cb GC GCGAGAAGCC (2) 11.4 0.0114 P8 Cb GC GAGCACATCC (5) 3.3 0.0033 P8 Cb GC TCTTTTTCAC 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TCAAAAAAAA (60) 99.4 0.0994 Cb medulloblastoma TCTTCTCACA (5) 13.9 0.0139 Cb medulloblastoma GCGAGAAGCC (2) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TCTTCTCACA (5) 27.4 0.0274 P8 GC+1d culture TCAAAAAAAA (60) 17.1 0.0171 P8 GC+1d culture GCGAGAAGCC (2) 10.3 0.0103 P8 GC+1d culture TCTAGTCATA (3) 4.6 0.0046 P8 GC+1d culture GAGCACATCC (5) 1.1 0.0011 P8 GC+1d culture GCCAGTACCC (6) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TCAAAAAAAA (60) 51.5 0.0515 P8 GC+SHH+1d culture TCTTCTCACA (5) 17.6 0.0176 P8 GC+SHH+1d culture GCGAGAAGCC (2) 8.2 0.0082 P8 GC+SHH+1d culture GAGCACATCC (5) 5.9 0.0059 P8 GC+SHH+1d culture TCTAGTCATA (3) 4.7 0.0047 P8 GC+SHH+1d culture GCCAGTACCC (6) 1.2 0.0012 P8 GC+SHH+1d culture GCGGGGGCCA (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTCTTTTTT (8) 1.2 0.0012 3T3 fibroblasts TCTTCTCACA (5) 38.6 0.0386 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GCCAGTACCC (6) 17.5 0.0175 3T3 fibroblasts GCGAGAAGCC (2) 14 0.014 3T3 fibroblasts TCAAAAAAAA (60) 7 0.007 3T3 fibroblasts GAGCACATCC (5) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TCTTCTCACA (5) 24.7 0.0247 E15 cortex TCAAAAAAAA (60) 14.8 0.0148 E15 cortex CGTCCTTTTT (2) 4.9 0.0049 E15 cortex GCCAGTACCC (6) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TCTTCTCACA (5) 45.5 0.0455 P1 cortex TCAAAAAAAA (60) 22.7 0.0227 P1 cortex GCCAGTACCC (6) 9.1 0.0091 P1 cortex GAGCACATCC (5) 4.5 0.0045 P1 cortex GCGAGAAGCC (2) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TCAAAAAAAA (60) 39.8 0.0398 Hypothalamus GCGAGAAGCC (2) 7.2 0.0072 Hypothalamus TCTTCTCACA (5) 5.4 0.0054 Hypothalamus CGTCCTTTTT (2) 3.6 0.0036 Hypothalamus GAGCACATCC (5) 3.6 0.0036 Hypothalamus GCGGGGGCCA (2) 1.8 0.0018 Hypothalamus TCTAGTCATA (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TCTTCTCACA (5) 33.8 0.0338 E12.5 retina GCGAGAAGCC (2) 31.9 0.0319 E12.5 retina TCAAAAAAAA (60) 18.8 0.0188 E12.5 retina GAGCACATCC (5) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TCAAAAAAAA (60) 41.9 0.0419 E14.5 retina GCGAGAAGCC (2) 9.1 0.0091 E14.5 retina GAGCACATCC (5) 3.6 0.0036 E14.5 retina TCTAGTCATA (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TCAAAAAAAA (60) 18.1 0.0181 E16.5 retina GCGAGAAGCC (2) 7.2 0.0072 E16.5 retina GAGCACATCC (5) 3.6 0.0036 E16.5 retina TCTTCTCACA (5) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TCAAAAAAAA (60) 49.1 0.0491 E18.5 retina GCGAGAAGCC (2) 16.4 0.0164 E18.5 retina TCTTCTCACA (5) 7.3 0.0073 E18.5 retina GAGCACATCC (5) 3.6 0.0036 E18.5 retina TCTAGTCATA (3) 1.8 0.0018 E18.5 retina TTTCTTTTTT (8) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TCTTCTCACA (5) 35.3 0.0353 P0.5 retina TCAAAAAAAA (60) 31.4 0.0314 P0.5 retina GCGAGAAGCC (2) 23.6 0.0236 P0.5 retina GCCAGTACCC (6) 7.9 0.0079 P0.5 retina GAGCACATCC (5) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TCAAAAAAAA (60) 35.2 0.0352 P2.5 retina TCTTCTCACA (5) 15.8 0.0158 P2.5 retina GCGAGAAGCC (2) 5.3 0.0053 P2.5 retina TCTAGTCATA (3) 5.3 0.0053 P2.5 retina GAGCACATCC (5) 3.5 0.0035 P2.5 retina GCGGGGGCCA (2) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TCAAAAAAAA (60) 37.6 0.0376 P4.5 retina TCTTCTCACA (5) 17.8 0.0178 P4.5 retina TCTAGTCATA (3) 7.9 0.0079 P4.5 retina GCGAGAAGCC (2) 4 0.004 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TCAAAAAAAA (60) 31.7 0.0317 P6.5 retina TCTTCTCACA (5) 8.3 0.0083 P6.5 retina GCGAGAAGCC (2) 3.3 0.0033 P6.5 retina GCGGGGGCCA (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TCAAAAAAAA (60) 14.9 0.0149 P10.5 crx- retina GAGCACATCC (5) 5.6 0.0056 P10.5 crx- retina GCGAGAAGCC (2) 3.7 0.0037 P10.5 crx- retina GCCAGTACCC (6) 1.9 0.0019 P10.5 crx- retina TCTAGTCATA (3) 1.9 0.0019 P10.5 crx- retina TCTTCTCACA (5) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TCTTCTCACA (5) 23.1 0.0231 P10.5 crx+ retina GCGAGAAGCC (2) 21.1 0.0211 P10.5 crx+ retina TCAAAAAAAA (60) 17.3 0.0173 P10.5 crx+ retina GCCAGTACCC (6) 1.9 0.0019 P10.5 crx+ retina TCTAGTCATA (3) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TCAAAAAAAA (60) 20.4 0.0204 Adult retinal TCTTCTCACA (5) 18.5 0.0185 Adult retinal GCCAGTACCC (6) 1.9 0.0019 Adult retinal GCGAGAAGCC (2) 1.9 0.0019 Adult retinal GCGGGGGCCA (2) 1.9 0.0019 Adult retinal TCTAGTCATA (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TCTTCTCACA (5) 17.2 0.0172 ONL TCAAAAAAAA (60) 15.3 0.0153 ONL GCGAGAAGCC (2) 5.7 0.0057 ONL TCTTTTTCAC 3.8 0.0038