Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.33263	5430410E06Rik	RIKEN cDNA 5430410E06 gene	17		71413
Mm.33263	Ssfa1	sperm specific antigen 1	15		20826
Mm.33263	H2-D1	histocompatibility 2, D region locus 1	17	17 19.09 cM	14964
Mm.33263	H2-L	histocompatibility 2, D region	17	17 19.13 cM	14980
Mm.33263	H2-Q2	histocompatibility 2, Q region locus 2	17	17 19.15 cM	15013
Gene Ontology	defense response | integral to membrane
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 175 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GTGGTTCACA (32) 14.7 0.0147 P8 Cb GC AAAAGGTTGA (7) 6.5 0.0065 P8 Cb GC GAGCTTGTAG (7) 6.5 0.0065 P8 Cb GC GATTGAGAAT (8) 4.9 0.0049 P8 Cb GC GGAGCTGTGG (7) 1.6 0.0016 P8 Cb GC GGGCTCACAA (7) 1.6 0.0016 P8 Cb GC GTGGCTCCCA (14) 1.6 0.0016 P8 Cb GC GTGGGTCACA (16) 1.6 0.0016 P8 Cb GC TTAAAGTCAG (6) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma AAAAGGTTGA (7) 23.1 0.0231 Cb medulloblastoma GATTGAGAAT (8) 16.2 0.0162 Cb medulloblastoma GTGGTTCACA (32) 11.6 0.0116 Cb medulloblastoma GTGGGTCACA (16) 6.9 0.0069 Cb medulloblastoma GGGCTCACAA (7) 2.3 0.0023 Cb medulloblastoma GTGGCTCCCA (14) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GATTGAGAAT (8) 19.4 0.0194 P8 GC+1d culture GTGGTTCACA (32) 18.3 0.0183 P8 GC+1d culture GAGCTTGTAG (7) 8 0.008 P8 GC+1d culture AAAAGGTTGA (7) 3.4 0.0034 P8 GC+1d culture GGGCTCACAA (7) 3.4 0.0034 P8 GC+1d culture GTGGCTCCCA (14) 3.4 0.0034 P8 GC+1d culture GTGGGTCACA (16) 2.3 0.0023 P8 GC+1d culture GACTGCAGTT (6) 1.1 0.0011 P8 GC+1d culture TGTTGAGAGA (6) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GTGGTTCACA (32) 31.6 0.0316 P8 GC+SHH+1d culture GATTGAGAAT (8) 19.9 0.0199 P8 GC+SHH+1d culture AAAAGGTTGA (7) 9.4 0.0094 P8 GC+SHH+1d culture GAGCTTGTAG (7) 2.3 0.0023 P8 GC+SHH+1d culture GGGCTCACAA (7) 2.3 0.0023 P8 GC+SHH+1d culture GTGGCTCCCA (14) 2.3 0.0023 P8 GC+SHH+1d culture GTGGGTCACA (16) 2.3 0.0023 P8 GC+SHH+1d culture CTGCTCCTGC (16) 1.2 0.0012 P8 GC+SHH+1d culture GACTGCAGTT (6) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GTGGTTCACA (32) 17.5 0.0175 3T3 fibroblasts TGAGACTGTG (13) 10.5 0.0105 3T3 fibroblasts GAGCTTGTAG (7) 3.5 0.0035 3T3 fibroblasts GTGGGCTCAC (14) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GTGGGCTCAC (14) 9.9 0.0099 E15 cortex GTGGGTCACA (16) 9.9 0.0099 E15 cortex CTGCTCCTGC (16) 4.9 0.0049 E15 cortex GGAGCTGTGG (7) 4.9 0.0049 E15 cortex GTGGCTCCCA (14) 4.9 0.0049 E15 cortex GTGGTTCACA (32) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GTGGTTCACA (32) 27.3 0.0273 P1 cortex GTGGCTCCCA (14) 18.2 0.0182 P1 cortex TGTTGAGAGA (6) 9.1 0.0091 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus AAAAGGTTGA (7) 16.3 0.0163 Hypothalamus GTGGTTCACA (32) 12.7 0.0127 Hypothalamus GTGGCTCCCA (14) 10.9 0.0109 Hypothalamus GATTGAGAAT (8) 3.6 0.0036 Hypothalamus GTGGGCTCAC (14) 3.6 0.0036 Hypothalamus GAGCTTGTAG (7) 1.8 0.0018 Hypothalamus GTGGGTCACA (16) 1.8 0.0018 Hypothalamus TGTTGAGAGA (6) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GTGGTTCACA (32) 28.2 0.0282 E12.5 retina GTGGCTCCCA (14) 16.9 0.0169 E12.5 retina AAAAGGTTGA (7) 5.6 0.0056 E12.5 retina GAGCTTGTAG (7) 3.8 0.0038 E12.5 retina GTGGGTCACA (16) 3.8 0.0038 E12.5 retina GGAGCTGTGG (7) 1.9 0.0019 E12.5 retina GTGGGCTCAC (14) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GTGGTTCACA (32) 51 0.051 E14.5 retina GTGGCTCCCA (14) 16.4 0.0164 E14.5 retina AAAAGGTTGA (7) 5.5 0.0055 E14.5 retina TGGTCCCACC (6) 3.6 0.0036 E14.5 retina CTGCTCCTGC (16) 1.8 0.0018 E14.5 retina GATTGAGAAT (8) 1.8 0.0018 E14.5 retina GGGCTCACAA (7) 1.8 0.0018 E14.5 retina GTGGGTCACA (16) 1.8 0.0018 E14.5 retina TGTTGAGAGA (6) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GTGGTTCACA (32) 39.8 0.0398 E16.5 retina TGGTCCCACC (6) 12.7 0.0127 E16.5 retina GTGGCTCCCA (14) 9.1 0.0091 E16.5 retina GGGCTCACAA (7) 5.4 0.0054 E16.5 retina GTGGGCTCAC (14) 5.4 0.0054 E16.5 retina AAAAGGTTGA (7) 3.6 0.0036 E16.5 retina GTGGGTCACA (16) 3.6 0.0036 E16.5 retina TTAAAGTCAG (6) 3.6 0.0036 E16.5 retina GAGCTTGTAG (7) 1.8 0.0018 E16.5 retina GATTGAGAAT (8) 1.8 0.0018 E16.5 retina TGTTGAGAGA (6) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GTGGTTCACA (32) 40 0.04 E18.5 retina GTGGCTCCCA (14) 20 0.02 E18.5 retina AAAAGGTTGA (7) 14.6 0.0146 E18.5 retina GTGGGTCACA (16) 7.3 0.0073 E18.5 retina GATTGAGAAT (8) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina GTGGTTCACA (32) 35.3 0.0353 P0.5 retina GTGGCTCCCA (14) 9.8 0.0098 P0.5 retina GGGCTCACAA (7) 5.9 0.0059 P0.5 retina AAAAGGTTGA (7) 3.9 0.0039 P0.5 retina GTGGGCTCAC (14) 3.9 0.0039 P0.5 retina TGGTCCCACC (6) 3.9 0.0039 P0.5 retina TGTTGAGAGA (6) 3.9 0.0039 P0.5 retina GAGCTTGTAG (7) 2 0.002 P0.5 retina GATTGAGAAT (8) 2 0.002 P0.5 retina GTGGGTCACA (16) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GTGGCTCCCA (14) 26.4 0.0264 P2.5 retina GTGGTTCACA (32) 12.3 0.0123 P2.5 retina GGGCTCACAA (7) 5.3 0.0053 P2.5 retina GTGGGCTCAC (14) 5.3 0.0053 P2.5 retina AAAAGGTTGA (7) 3.5 0.0035 P2.5 retina GTGGGTCACA (16) 3.5 0.0035 P2.5 retina GATTGAGAAT (8) 1.8 0.0018 P2.5 retina TGTTGAGAGA (6) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GTGGTTCACA (32) 33.7 0.0337 P4.5 retina GTGGCTCCCA (14) 9.9 0.0099 P4.5 retina GGGCTCACAA (7) 7.9 0.0079 P4.5 retina GTGGGCTCAC (14) 7.9 0.0079 P4.5 retina AAAAGGTTGA (7) 5.9 0.0059 P4.5 retina GATTGAGAAT (8) 4 0.004 P4.5 retina TGTTGAGAGA (6) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GTGGTTCACA (32) 25 0.025 P6.5 retina GTGGCTCCCA (14) 15 0.015 P6.5 retina AAAAGGTTGA (7) 5 0.005 P6.5 retina GGGCTCACAA (7) 3.3 0.0033 P6.5 retina GTGGGCTCAC (14) 3.3 0.0033 P6.5 retina TGTTGAGAGA (6) 3.3 0.0033 P6.5 retina GAGCTTGTAG (7) 1.7 0.0017 P6.5 retina GGAGCTGTGG (7) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GTGGTTCACA (32) 20.4 0.0204 P10.5 crx- retina GTGGCTCCCA (14) 14.9 0.0149 P10.5 crx- retina GATTGAGAAT (8) 5.6 0.0056 P10.5 crx- retina GGAGCTGTGG (7) 5.6 0.0056 P10.5 crx- retina GTGGGCTCAC (14) 5.6 0.0056 P10.5 crx- retina AAAAGGTTGA (7) 3.7 0.0037 P10.5 crx- retina TGTTGAGAGA (6) 3.7 0.0037 P10.5 crx- retina GGGCTCACAA (7) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GTGGTTCACA (32) 32.7 0.0327 P10.5 crx+ retina GTGGCTCCCA (14) 11.5 0.0115 P10.5 crx+ retina GATTGAGAAT (8) 7.7 0.0077 P10.5 crx+ retina GTGGGCTCAC (14) 5.8 0.0058 P10.5 crx+ retina GAGCTTGTAG (7) 3.8 0.0038 P10.5 crx+ retina GGAGCTGTGG (7) 3.8 0.0038 P10.5 crx+ retina AAAAGGTTGA (7) 1.9 0.0019 P10.5 crx+ retina GGGCTCACAA (7) 1.9 0.0019 P10.5 crx+ retina TGTTGAGAGA (6) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GTGGTTCACA (32) 33.3 0.0333 Adult retinal GTGGCTCCCA (14) 14.8 0.0148 Adult retinal GATTGAGAAT (8) 7.4 0.0074 Adult retinal GGGCTCACAA (7) 7.4 0.0074 Adult retinal GTGGGCTCAC (14) 7.4 0.0074 Adult retinal AAAAGGTTGA (7) 5.6 0.0056 Adult retinal GTGGGTCACA (16) 5.6 0.0056 Adult retinal GAGCTTGTAG (7) 1.9 0.0019 Adult retinal GGAGCTGTGG (7) 1.9 0.0019 Adult retinal TGTTGAGAGA (6) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GTGGTTCACA (32) 32.6 0.0326 ONL GTGGCTCCCA (14) 28.7 0.0287 ONL GTGGGTCACA (16) 9.6 0.0096 ONL GGAGCTGTGG (7) 5.7 0.0057 ONL GTGGGCTCAC (14) 5.7 0.0057 ONL AAAAGGTTGA (7) 1.9 0.0019 ONL GACTGCAGTT (6) 1.9 0.0019 ONL GAGCTTGTAG (7) 1.9 0.0019 ONL GATTGAGAAT (8) 1.9 0.0019