Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.34701
Pum1
pumilio 1 (Drosophila)
4
4 D2.3
80912
Mm.34701
2810017D21Rik
RIKEN cDNA 2810017D21 gene
4
72638
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 10 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 110 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAACAGAACC (
5
)
22.8
0.0228
P8 Cb GC
CCTGTGGTTT
(
3
)
9.8
0.0098
P8 Cb GC
TGGACACTTT
(
2
)
9.8
0.0098
P8 Cb GC
AGAGAATACC
(
3
)
1.6
0.0016
P8 Cb GC
CCCACTGGCC (
2
)
1.6
0.0016
P8 Cb GC
TTATGTGTAA
(
4
)
1.6
0.0016
Cb medulloblastoma
GAACAGAACC (
5
)
6.9
0.0069
Cb medulloblastoma
TTATGTGTAA
(
4
)
6.9
0.0069
Cb medulloblastoma
GGCACTGTCC (
8
)
4.6
0.0046
Cb medulloblastoma
TGGACACTTT
(
2
)
4.6
0.0046
Cb medulloblastoma
CCTGTGGTTT
(
3
)
2.3
0.0023
Cb medulloblastoma
TTCCTGCTGC
(
3
)
2.3
0.0023
P8 GC+1d culture
GAACAGAACC (
5
)
10.3
0.0103
P8 GC+1d culture
AGAGAATACC
(
3
)
4.6
0.0046
P8 GC+1d culture
CCTGTGGTTT
(
3
)
4.6
0.0046
P8 GC+1d culture
GGCACTGTCC (
8
)
4.6
0.0046
P8 GC+1d culture
GGGCAGCTGG (
12
)
1.1
0.0011
P8 GC+1d culture
TTATGTGTAA
(
4
)
1.1
0.0011
P8 GC+1d culture
TTCCTGCTGC
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
GAACAGAACC (
5
)
9.4
0.0094
P8 GC+SHH+1d culture
CCTGTGGTTT
(
3
)
4.7
0.0047
P8 GC+SHH+1d culture
GGCACTGTCC (
8
)
3.5
0.0035
P8 GC+SHH+1d culture
GGGCAGCTGG (
12
)
3.5
0.0035
P8 GC+SHH+1d culture
TGGACACTTT
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
TTATGTGTAA
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
AGAGAATACC
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGGGGGTGG (
12
)
1.2
0.0012
P8 GC+SHH+1d culture
TTCCTGCTGC
(
3
)
1.2
0.0012
3T3 fibroblasts
GGGCAGCTGG (
12
)
21
0.021
3T3 fibroblasts
CCCAGGTCTC (
4
)
3.5
0.0035
3T3 fibroblasts
GGGGGGGTGG (
12
)
3.5
0.0035
E15 cortex
GGCACTGTCC (
8
)
14.8
0.0148
E15 cortex
CCTGTGGTTT
(
3
)
9.9
0.0099
E15 cortex
AGAGAATACC
(
3
)
4.9
0.0049
E15 cortex
CCCAGGTCTC (
4
)
4.9
0.0049
E15 cortex
GAACAGAACC (
5
)
4.9
0.0049
E15 cortex
TGGACACTTT
(
2
)
4.9
0.0049
Hypothalamus
GGGCAGCTGG (
12
)
1.8
0.0018
Hypothalamus
TCCTATCATT
(
3
)
1.8
0.0018
E12.5 retina
CCTGTGGTTT
(
3
)
5.6
0.0056
E12.5 retina
GAACAGAACC (
5
)
5.6
0.0056
E12.5 retina
TGGACACTTT
(
2
)
3.8
0.0038
E12.5 retina
CCCACTGGCC (
2
)
1.9
0.0019
E12.5 retina
GGCACTGTCC (
8
)
1.9
0.0019
E12.5 retina
GGGCAGCTGG (
12
)
1.9
0.0019
E12.5 retina
GGGGGGGTGG (
12
)
1.9
0.0019
E14.5 retina
GAACAGAACC (
5
)
16.4
0.0164
E14.5 retina
CCTGTGGTTT
(
3
)
9.1
0.0091
E14.5 retina
TCCTATCATT
(
3
)
3.6
0.0036
E14.5 retina
GGCACTGTCC (
8
)
1.8
0.0018
E14.5 retina
TGTTTTGAAG (
7
)
1.8
0.0018
E14.5 retina
TTATGTGTAA
(
4
)
1.8
0.0018
E16.5 retina
GAACAGAACC (
5
)
18.1
0.0181
E16.5 retina
CCTGTGGTTT
(
3
)
12.7
0.0127
E16.5 retina
TGGACACTTT
(
2
)
3.6
0.0036
E16.5 retina
GGGCAGCTGG (
12
)
1.8
0.0018
E18.5 retina
GAACAGAACC (
5
)
7.3
0.0073
E18.5 retina
CCTGTGGTTT
(
3
)
3.6
0.0036
E18.5 retina
TGGACACTTT
(
2
)
1.8
0.0018
P0.5 retina
GAACAGAACC (
5
)
15.7
0.0157
P0.5 retina
GGCACTGTCC (
8
)
5.9
0.0059
P0.5 retina
CCTGTGGTTT
(
3
)
3.9
0.0039
P0.5 retina
TGGACACTTT
(
2
)
3.9
0.0039
P0.5 retina
TTCCTGCTGC
(
3
)
3.9
0.0039
P0.5 retina
AGAGAATACC
(
3
)
2
0.002
P0.5 retina
GGGCAGCTGG (
12
)
2
0.002
P0.5 retina
TGTTTTGAAG (
7
)
2
0.002
P0.5 retina
TTATGTGTAA
(
4
)
2
0.002
P2.5 retina
GAACAGAACC (
5
)
42.2
0.0422
P2.5 retina
CCTGTGGTTT
(
3
)
8.8
0.0088
P2.5 retina
GGCACTGTCC (
8
)
7
0.007
P2.5 retina
TTATGTGTAA
(
4
)
5.3
0.0053
P2.5 retina
TGGACACTTT
(
2
)
3.5
0.0035
P2.5 retina
AGAGAATACC
(
3
)
1.8
0.0018
P2.5 retina
CCCACTGGCC (
2
)
1.8
0.0018
P2.5 retina
GGGCAGCTGG (
12
)
1.8
0.0018
P4.5 retina
GAACAGAACC (
5
)
51.5
0.0515
P4.5 retina
CCTGTGGTTT
(
3
)
7.9
0.0079
P4.5 retina
TGGACACTTT
(
2
)
7.9
0.0079
P4.5 retina
CCCACTGGCC (
2
)
2
0.002
P4.5 retina
GGGCAGCTGG (
12
)
2
0.002
P4.5 retina
TGTTTTGAAG (
7
)
2
0.002
P6.5 retina
GAACAGAACC (
5
)
20
0.02
P6.5 retina
GGCACTGTCC (
8
)
13.3
0.0133
P6.5 retina
CCTGTGGTTT
(
3
)
10
0.01
P6.5 retina
TGGACACTTT
(
2
)
8.3
0.0083
P6.5 retina
AGAGAATACC
(
3
)
1.7
0.0017
P6.5 retina
CCCACTGGCC (
2
)
1.7
0.0017
P6.5 retina
GGGCAGCTGG (
12
)
1.7
0.0017
P6.5 retina
TGTTTTGAAG (
7
)
1.7
0.0017
P10.5 crx- retina
GAACAGAACC (
5
)
33.4
0.0334
P10.5 crx- retina
CCTGTGGTTT
(
3
)
16.7
0.0167
P10.5 crx- retina
GGGCAGCTGG (
12
)
5.6
0.0056
P10.5 crx- retina
AGAGAATACC
(
3
)
1.9
0.0019
P10.5 crx- retina
GGCACTGTCC (
8
)
1.9
0.0019
P10.5 crx- retina
TGGACACTTT
(
2
)
1.9
0.0019
P10.5 crx- retina
TGTTTTGAAG (
7
)
1.9
0.0019
P10.5 crx- retina
TTATGTGTAA
(
4
)
1.9
0.0019
P10.5 crx+ retina
CCTGTGGTTT
(
3
)
11.5
0.0115
P10.5 crx+ retina
GAACAGAACC (
5
)
3.8
0.0038
P10.5 crx+ retina
GGCACTGTCC (
8
)
1.9
0.0019
Adult retinal
GGGCAGCTGG (
12
)
7.4
0.0074
Adult retinal
AGAGAATACC
(
3
)
1.9
0.0019
Adult retinal
CCCAGGTCTC (
4
)
1.9
0.0019
Adult retinal
GAACAGAACC (
5
)
1.9
0.0019
Adult retinal
GGCACTGTCC (
8
)
1.9
0.0019
Adult retinal
TTCCTGCTGC
(
3
)
1.9
0.0019
ONL
TGGACACTTT
(
2
)
5.7
0.0057
ONL
GAACAGAACC (
5
)
3.8
0.0038
ONL
GGGCAGCTGG (
12
)
1.9
0.0019
