Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.35345	Bat8	HLA-B associated transcript 8	17	17 18.87 cM	110147
Gene Ontology	DNA binding | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	BAT8[HLA-B associated transcript 8]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 113 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTAGTGGAGC (5) 39.2 0.0392 P8 Cb GC GATGTGACCA (2) 9.8 0.0098 P8 Cb GC TAGTTGCTGG (7) 3.3 0.0033 P8 Cb GC CTGCACCAAG (2) 1.6 0.0016 P8 Cb GC GAGAGCCTGC (5) 1.6 0.0016 P8 Cb GC GATCTGACCC (3) 1.6 0.0016 P8 Cb GC GCACTGCCCT (11) 1.6 0.0016 P8 Cb GC TAGACACCTG (5) 1.6 0.0016 Cb medulloblastoma GTAGTGGAGC (5) 97.1 0.0971 Cb medulloblastoma GATGTGACCA (2) 4.6 0.0046 Cb medulloblastoma TAGTTGCTGG (7) 4.6 0.0046 Cb medulloblastoma AGCTCAAAAA 2.3 0.0023 Cb medulloblastoma GATCTGACCC (3) 2.3 0.0023 P8 GC+1d culture GTAGTGGAGC (5) 41.1 0.0411 P8 GC+1d culture GATGTGACCA (2) 5.7 0.0057 P8 GC+1d culture TAGTTGCTGG (7) 4.6 0.0046 P8 GC+1d culture GAGAGCCTGC (5) 3.4 0.0034 P8 GC+1d culture CTGCACCAAG (2) 2.3 0.0023 P8 GC+1d culture AGCTCAAAAA 1.1 0.0011 P8 GC+1d culture GCACTGCCCT (11) 1.1 0.0011 P8 GC+1d culture TAGACACCTG (5) 1.1 0.0011 P8 GC+SHH+1d culture GTAGTGGAGC (5) 15.2 0.0152 P8 GC+SHH+1d culture TAGTTGCTGG (7) 7 0.007 P8 GC+SHH+1d culture GAGAGCCTGC (5) 3.5 0.0035 P8 GC+SHH+1d culture TAGACACCTG (5) 3.5 0.0035 P8 GC+SHH+1d culture GATGTGACCA (2) 2.3 0.0023 P8 GC+SHH+1d culture AAAACCCGGA 1.2 0.0012 P8 GC+SHH+1d culture AGCTCAAAAA 1.2 0.0012 P8 GC+SHH+1d culture CTGCACCAAG (2) 1.2 0.0012 P8 GC+SHH+1d culture GCACTGCCCT (11) 1.2 0.0012 3T3 fibroblasts GTAGTGGAGC (5) 21 0.021 3T3 fibroblasts GATGTGACCA (2) 17.5 0.0175 3T3 fibroblasts GCACTGCCCT (11) 14 0.014 3T3 fibroblasts CTGCACCAAG (2) 7 0.007 3T3 fibroblasts GAGAGCCTGC (5) 3.5 0.0035 3T3 fibroblasts TAGTTGCTGG (7) 3.5 0.0035 E15 cortex CATCTGGGGA (6) 14.8 0.0148 E15 cortex AGCTCAAAAA 4.9 0.0049 E15 cortex CTGCACCAAG (2) 4.9 0.0049 E15 cortex TAGTTGCTGG (7) 4.9 0.0049 P1 cortex TAGTTGCTGG (7) 9.1 0.0091 P1 cortex CTGCACCAAG (2) 4.5 0.0045 P1 cortex GATGTGACCA (2) 4.5 0.0045 Hypothalamus GTAGTGGAGC (5) 90.6 0.0906 Hypothalamus GATCTGACCC (3) 12.7 0.0127 Hypothalamus TAGTTGCTGG (7) 10.9 0.0109 Hypothalamus CTGCACCAAG (2) 3.6 0.0036 Hypothalamus GATGTGACCA (2) 1.8 0.0018 E12.5 retina GATGTGACCA (2) 16.9 0.0169 E12.5 retina GTAGTGGAGC (5) 5.6 0.0056 E12.5 retina TAGTTGCTGG (7) 3.8 0.0038 E12.5 retina CTGCACCAAG (2) 1.9 0.0019 E14.5 retina TAGTTGCTGG (7) 76.5 0.0765 E14.5 retina GTAGTGGAGC (5) 21.9 0.0219 E14.5 retina GAGAGCCTGC (5) 3.6 0.0036 E14.5 retina AAAACCCGGA 1.8 0.0018 E14.5 retina GATCTGACCC (3) 1.8 0.0018 E16.5 retina TAGTTGCTGG (7) 36.2 0.0362 E16.5 retina GTAGTGGAGC (5) 16.3 0.0163 E16.5 retina GATGTGACCA (2) 5.4 0.0054 E16.5 retina AAAACCCGGA 1.8 0.0018 E18.5 retina GTAGTGGAGC (5) 10.9 0.0109 E18.5 retina TAGTTGCTGG (7) 7.3 0.0073 E18.5 retina GATGTGACCA (2) 1.8 0.0018 P0.5 retina CTGCACCAAG (2) 15.7 0.0157 P0.5 retina GATGTGACCA (2) 11.8 0.0118 P0.5 retina GTAGTGGAGC (5) 9.8 0.0098 P0.5 retina GAGAGCCTGC (5) 7.9 0.0079 P0.5 retina GATCTGACCC (3) 2 0.002 P0.5 retina TAGTTGCTGG (7) 2 0.002 P2.5 retina GTAGTGGAGC (5) 14.1 0.0141 P2.5 retina CTGCACCAAG (2) 5.3 0.0053 P2.5 retina TAGTTGCTGG (7) 5.3 0.0053 P2.5 retina AAAACCCGGA 1.8 0.0018 P2.5 retina GATGTGACCA (2) 1.8 0.0018 P4.5 retina GTAGTGGAGC (5) 7.9 0.0079 P4.5 retina TAGTTGCTGG (7) 5.9 0.0059 P4.5 retina CTGCACCAAG (2) 4 0.004 P4.5 retina GTGCCCAACC 4 0.004 P4.5 retina GAGAGCCTGC (5) 2 0.002 P4.5 retina GATCTGACCC (3) 2 0.002 P4.5 retina GATGTGACCA (2) 2 0.002 P6.5 retina GTAGTGGAGC (5) 33.3 0.0333 P6.5 retina GATGTGACCA (2) 8.3 0.0083 P6.5 retina CTGCACCAAG (2) 3.3 0.0033 P6.5 retina TAGACACCTG (5) 3.3 0.0033 P6.5 retina GAGAGCCTGC (5) 1.7 0.0017 P6.5 retina GATCTGACCC (3) 1.7 0.0017 P6.5 retina TAGTTGCTGG (7) 1.7 0.0017 P10.5 crx- retina GTAGTGGAGC (5) 105.9 0.1059 P10.5 crx- retina GATGTGACCA (2) 22.3 0.0223 P10.5 crx- retina TAGTTGCTGG (7) 13 0.013 P10.5 crx- retina GAGAGCCTGC (5) 7.4 0.0074 P10.5 crx- retina GATCTGACCC (3) 3.7 0.0037 P10.5 crx- retina CTGCACCAAG (2) 1.9 0.0019 P10.5 crx- retina TAGACACCTG (5) 1.9 0.0019 P10.5 crx+ retina GTAGTGGAGC (5) 76.9 0.0769 P10.5 crx+ retina TAGTTGCTGG (7) 5.8 0.0058 P10.5 crx+ retina GATCTGACCC (3) 3.8 0.0038 P10.5 crx+ retina GATGTGACCA (2) 1.9 0.0019 P10.5 crx+ retina TAGACACCTG (5) 1.9 0.0019 Adult retinal GTAGTGGAGC (5) 38.9 0.0389 Adult retinal TAGTTGCTGG (7) 14.8 0.0148 Adult retinal GATGTGACCA (2) 7.4 0.0074 Adult retinal CTGCACCAAG (2) 3.7 0.0037 Adult retinal GAGAGCCTGC (5) 3.7 0.0037 Adult retinal GTGGGGTGGC (3) 3.7 0.0037 Adult retinal GATCTGACCC (3) 1.9 0.0019 Adult retinal GTGCCCAACC 1.9 0.0019 ONL TAGTTGCTGG (7) 19.2 0.0192 ONL GATGTGACCA (2) 3.8 0.0038 ONL GTAGTGGAGC (5) 3.8 0.0038 ONL GTGGGGTGGC (3) 3.8 0.0038