Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.53862
Plxnb1
plexin B1
9
235611
Gene Ontology
development
|
integral to membrane
|
membrane
|
receptor activity
Human Homolog
PLXNB1[plexin B1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 84 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
AAAATAAAAA
(
28
)
6.5
0.0065
P8 Cb GC
GTTAAAAAAA (
26
)
4.9
0.0049
P8 Cb GC
AATTTTTAAA
(
9
)
3.3
0.0033
P8 Cb GC
CCTCAGTACA (
3
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
GTTAAAAAAA (
26
)
25.4
0.0254
Cb medulloblastoma
AAAATAAAAA
(
28
)
9.2
0.0092
Cb medulloblastoma
AATTTTTAAA
(
9
)
4.6
0.0046
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
GTTAAAAAAA (
26
)
13.7
0.0137
P8 GC+1d culture
AAAATAAAAA
(
28
)
8
0.008
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
GTTAAAAAAA (
26
)
16.4
0.0164
P8 GC+SHH+1d culture
AAAATAAAAA
(
28
)
5.9
0.0059
P8 GC+SHH+1d culture
CTGACTGTGA (
7
)
2.3
0.0023
P8 GC+SHH+1d culture
AATTTTTAAA
(
9
)
1.2
0.0012
P8 GC+SHH+1d culture
GTATGGAAAA
(
5
)
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
CCTCAGTACA (
3
)
7
0.007
3T3 fibroblasts
ACCCTGTTTC
3.5
0.0035
3T3 fibroblasts
CTGACTGTGA (
7
)
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
AAAATAAAAA
(
28
)
9.1
0.0091
P1 cortex
ACCCTGTTTC
4.5
0.0045
P1 cortex
GTTAAAAAAA (
26
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
GTTAAAAAAA (
26
)
9.1
0.0091
Hypothalamus
AAAATAAAAA
(
28
)
3.6
0.0036
Hypothalamus
GTATGGAAAA
(
5
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
AAAATAAAAA
(
28
)
5.6
0.0056
E12.5 retina
ACCCTGTTTC
3.8
0.0038
E12.5 retina
GTTAAAAAAA (
26
)
3.8
0.0038
E12.5 retina
CTGACTGTGA (
7
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
GTTAAAAAAA (
26
)
20
0.02
E14.5 retina
AAAATAAAAA
(
28
)
14.6
0.0146
E14.5 retina
AATTTTTAAA
(
9
)
3.6
0.0036
E14.5 retina
GCAGGGATGG (
3
)
3.6
0.0036
E14.5 retina
GTATGGAAAA
(
5
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
GTTAAAAAAA (
26
)
16.3
0.0163
E16.5 retina
AAAATAAAAA
(
28
)
10.9
0.0109
E16.5 retina
ACCCTGTTTC
1.8
0.0018
E16.5 retina
CTGACTGTGA (
7
)
1.8
0.0018
E16.5 retina
GTATGGAAAA
(
5
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
GTTAAAAAAA (
26
)
27.3
0.0273
E18.5 retina
AAAATAAAAA
(
28
)
16.4
0.0164
E18.5 retina
GTATGGAAAA
(
5
)
3.6
0.0036
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
AAAATAAAAA
(
28
)
5.9
0.0059
P0.5 retina
GTTAAAAAAA (
26
)
3.9
0.0039
P0.5 retina
ACCCTGTTTC
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
AAAATAAAAA
(
28
)
19.4
0.0194
P2.5 retina
GTTAAAAAAA (
26
)
7
0.007
P2.5 retina
GCAGGGATGG (
3
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
AAAATAAAAA
(
28
)
21.8
0.0218
P4.5 retina
GTTAAAAAAA (
26
)
11.9
0.0119
P4.5 retina
CTGACTGTGA (
7
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
GTTAAAAAAA (
26
)
15
0.015
P6.5 retina
AAAATAAAAA
(
28
)
11.7
0.0117
P6.5 retina
GTATGGAAAA
(
5
)
5
0.005
P6.5 retina
CCTCAGTACA (
3
)
3.3
0.0033
P6.5 retina
CTGACTGTGA (
7
)
1.7
0.0017
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GTTAAAAAAA (
26
)
5.6
0.0056
P10.5 crx- retina
AAAATAAAAA
(
28
)
3.7
0.0037
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
GTTAAAAAAA (
26
)
15.4
0.0154
P10.5 crx+ retina
AAAATAAAAA
(
28
)
1.9
0.0019
P10.5 crx+ retina
CCTCAGTACA (
3
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
AAAATAAAAA
(
28
)
1.9
0.0019
Adult retinal
AATTTTTAAA
(
9
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
AAAATAAAAA
(
28
)
11.5
0.0115
ONL
GTTAAAAAAA (
26
)
3.8
0.0038
ONL
AATTTTTAAA
(
9
)
1.9
0.0019
