Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.56337	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit	11	11 44.0 cM	18472
Gene Ontology	1-alkyl-2-acetylglycerophosphocholine esterase activity | acrosome formation | cell migration | centrosome | cytoplasm | cytoskeleton | hydrolase activity | microtubule associated complex | microtubule binding | microtubule cytoskeleton | mitosis | neuroblast proliferation | neurogenesis | neuronal migration | retrograde axon cargo transport
Human Homolog	PAFAH1B1[platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 225 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC CTAAAAAAAA (20) 11.4 0.0114 P8 Cb GC TTTTGTTTAT (5) 11.4 0.0114 P8 Cb GC TTTTCTGCAT 9.8 0.0098 P8 Cb GC ACTTTTGGAA (10) 4.9 0.0049 P8 Cb GC TGGTGGAATG (4) 3.3 0.0033 P8 Cb GC GGCAAAATTG (2) 1.6 0.0016 P8 Cb GC GGTTTCCCCC (6) 1.6 0.0016 P8 Cb GC TAAATTATTC (2) 1.6 0.0016 P8 Cb GC TAAGTAGCTG 1.6 0.0016 P8 Cb GC TACATAATCT (5) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma CTAAAAAAAA (20) 39.3 0.0393 Cb medulloblastoma TTTTCTGCAT 20.8 0.0208 Cb medulloblastoma GCAGGACATT (2) 9.2 0.0092 Cb medulloblastoma TTTTGTTTAT (5) 4.6 0.0046 Cb medulloblastoma ACCCACAAGA (4) 2.3 0.0023 Cb medulloblastoma ACTTTTGGAA (10) 2.3 0.0023 Cb medulloblastoma ATACAGTGAA (2) 2.3 0.0023 Cb medulloblastoma GGCAAAATTG (2) 2.3 0.0023 Cb medulloblastoma GTGAATCCAA (4) 2.3 0.0023 Cb medulloblastoma TGGTGGAATG (4) 2.3 0.0023 Cb medulloblastoma TGGTGTGACC (2) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture CTAAAAAAAA (20) 19.4 0.0194 P8 GC+1d culture TTTTCTGCAT 11.4 0.0114 P8 GC+1d culture GCAGGACATT (2) 8 0.008 P8 GC+1d culture TTTTGTTTAT (5) 6.8 0.0068 P8 GC+1d culture AATTGTTTAA (2) 1.1 0.0011 P8 GC+1d culture ACCCACAAGA (4) 1.1 0.0011 P8 GC+1d culture ATACAGTGAA (2) 1.1 0.0011 P8 GC+1d culture CTAAAACTGA 1.1 0.0011 P8 GC+1d culture GAGGTTATAT (2) 1.1 0.0011 P8 GC+1d culture GGCAAAATTG (2) 1.1 0.0011 P8 GC+1d culture GTGAATCCAA (4) 1.1 0.0011 P8 GC+1d culture TGGTGGAATG (4) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture CTAAAAAAAA (20) 41 0.041 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture TTTTCTGCAT 21.1 0.0211 P8 GC+SHH+1d culture TTTTGTTTAT (5) 7 0.007 P8 GC+SHH+1d culture GCAGGACATT (2) 3.5 0.0035 P8 GC+SHH+1d culture ACCCACAAGA (4) 2.3 0.0023 P8 GC+SHH+1d culture GCAGTACTGA (2) 1.2 0.0012 P8 GC+SHH+1d culture GGTTTCCCCC (6) 1.2 0.0012 P8 GC+SHH+1d culture GTGAATCCAA (4) 1.2 0.0012 P8 GC+SHH+1d culture TAAATTAAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture TGGTGTGACC (2) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts TGGTGGAATG (4) 10.5 0.0105 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts GCAGGACATT (2) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex CTAAAAAAAA (20) 14.8 0.0148 E15 cortex GCAGGACATT (2) 14.8 0.0148 E15 cortex TGGTGGAATG (4) 14.8 0.0148 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex ACTTTTGGAA (10) 4.9 0.0049 E15 cortex GTGAATCCAA (4) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 E15 cortex TTTTCTGCAT 4.9 0.0049 E15 cortex TTTTGTTTAT (5) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex TTTTGTTTAT (5) 22.7 0.0227 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex GCAGGACATT (2) 9.1 0.0091 P1 cortex TGGTGGAATG (4) 9.1 0.0091 P1 cortex TTTTCTGCAT 9.1 0.0091 P1 cortex CTAAAAAAAA (20) 4.5 0.0045 P1 cortex CTAAAACTGA 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus CTAAAAAAAA (20) 16.3 0.0163 Hypothalamus TTTTCTGCAT 10.9 0.0109 Hypothalamus GCAGGACATT (2) 9.1 0.0091 Hypothalamus TTTTGTTTAT (5) 7.2 0.0072 Hypothalamus TAAATTATTC (2) 3.6 0.0036 Hypothalamus ACCCACAAGA (4) 1.8 0.0018 Hypothalamus ACCCCTGATA (3) 1.8 0.0018 Hypothalamus ACTTTTGGAA (10) 1.8 0.0018 Hypothalamus ATACAGTGAA (2) 1.8 0.0018 Hypothalamus GAGGTTATAT (2) 1.8 0.0018 Hypothalamus GATAAATTTT (3) 1.8 0.0018 Hypothalamus TGGGTGTGAG 1.8 0.0018 Hypothalamus TGGTGGAATG (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina CTAAAAAAAA (20) 11.3 0.0113 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina TTTTGTTTAT (5) 11.3 0.0113 E12.5 retina ACTTTTGGAA (10) 3.8 0.0038 E12.5 retina TAAATTATTC (2) 3.8 0.0038 E12.5 retina CTAAAACTGA 1.9 0.0019 E12.5 retina GCAGTACTGA (2) 1.9 0.0019 E12.5 retina GGTTTCCCCC (6) 1.9 0.0019 E12.5 retina GTGAATCCAA (4) 1.9 0.0019 E12.5 retina TGGTGGAATG (4) 1.9 0.0019 E12.5 retina TTTTCTGCAT 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina TTTTCTGCAT 18.2 0.0182 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina CTAAAAAAAA (20) 12.8 0.0128 E14.5 retina TTTTGTTTAT (5) 5.5 0.0055 E14.5 retina ATACAGTGAA (2) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina TTTTCTGCAT 14.5 0.0145 E16.5 retina TTTTGTTTAT (5) 10.9 0.0109 E16.5 retina GCAGGACATT (2) 7.2 0.0072 E16.5 retina CTAAAAAAAA (20) 5.4 0.0054 E16.5 retina ATACAGTGAA (2) 3.6 0.0036 E16.5 retina GCAGTACTGA (2) 3.6 0.0036 E16.5 retina TACATAATCT (5) 3.6 0.0036 E16.5 retina AATTGTTTAA (2) 1.8 0.0018 E16.5 retina ACCCCTGATA (3) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina CTAAAAAAAA (20) 20 0.02 E18.5 retina TTTTCTGCAT 18.2 0.0182 E18.5 retina TGGTGGAATG (4) 3.6 0.0036 E18.5 retina TAAATTAAAA (4) 1.8 0.0018 E18.5 retina TAAATTATTC (2) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina TTTTGTTTAT (5) 9.8 0.0098 P0.5 retina CTAAAAAAAA (20) 5.9 0.0059 P0.5 retina TTTTCTGCAT 5.9 0.0059 P0.5 retina TGGTGGAATG (4) 3.9 0.0039 P0.5 retina ATACAGTGAA (2) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina CTAAAAAAAA (20) 15.8 0.0158 P2.5 retina TTTTCTGCAT 10.6 0.0106 P2.5 retina ACCCACAAGA (4) 1.8 0.0018 P2.5 retina ACTTTTGGAA (10) 1.8 0.0018 P2.5 retina GCAGTACTGA (2) 1.8 0.0018 P2.5 retina GTGAATCCAA (4) 1.8 0.0018 P2.5 retina TAAATTAAAA (4) 1.8 0.0018 P2.5 retina TTTTGTTTAT (5) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina CTAAAAAAAA (20) 29.7 0.0297 P4.5 retina TGGTGGAATG (4) 7.9 0.0079 P4.5 retina TTTTCTGCAT 4 0.004 P4.5 retina ATACAGTGAA (2) 2 0.002 P4.5 retina GCAGTACTGA (2) 2 0.002 P4.5 retina GTGAATCCAA (4) 2 0.002 P4.5 retina TAAATTAAAA (4) 2 0.002 P4.5 retina TACATAATCT (5) 2 0.002 P4.5 retina TTTTGTTTAT (5) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TTTTCTGCAT 18.3 0.0183 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina CTAAAAAAAA (20) 13.3 0.0133 P6.5 retina TTTTGTTTAT (5) 6.7 0.0067 P6.5 retina ACCCACAAGA (4) 3.3 0.0033 P6.5 retina GAGGTTATAT (2) 3.3 0.0033 P6.5 retina GCAGGACATT (2) 3.3 0.0033 P6.5 retina ATACAGTGAA (2) 1.7 0.0017 P6.5 retina GATAAATTTT (3) 1.7 0.0017 P6.5 retina GCAGTACTGA (2) 1.7 0.0017 P6.5 retina GTGAATCCAA (4) 1.7 0.0017 P6.5 retina TAAATTATTC (2) 1.7 0.0017 P6.5 retina TGGGTGTGAG 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina TTTTCTGCAT 24.2 0.0242 P10.5 crx- retina GCAGGACATT (2) 16.7 0.0167 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina TTTTGTTTAT (5) 11.1 0.0111 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina CTAAAAAAAA (20) 5.6 0.0056 P10.5 crx- retina ACCCACAAGA (4) 1.9 0.0019 P10.5 crx- retina ACTTTTGGAA (10) 1.9 0.0019 P10.5 crx- retina GATAAATTTT (3) 1.9 0.0019 P10.5 crx- retina TAAGTAGCTG 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina TTTTCTGCAT 11.5 0.0115 P10.5 crx+ retina CTAAAAAAAA (20) 7.7 0.0077 P10.5 crx+ retina ACCCACAAGA (4) 5.8 0.0058 P10.5 crx+ retina GCAGGACATT (2) 5.8 0.0058 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina CTAAAACTGA 3.8 0.0038 P10.5 crx+ retina TGGTGTGACC (2) 3.8 0.0038 P10.5 crx+ retina AATTGTTTAA (2) 1.9 0.0019 P10.5 crx+ retina GCAGTACTGA (2) 1.9 0.0019 P10.5 crx+ retina TGGTGGAATG (4) 1.9 0.0019 P10.5 crx+ retina TTTTGTTTAT (5) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal GCAGGACATT (2) 7.4 0.0074 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal CTAAAAAAAA (20) 5.6 0.0056 Adult retinal TTTTCTGCAT 3.7 0.0037 Adult retinal TTTTGTTTAT (5) 3.7 0.0037 Adult retinal ACCCACAAGA (4) 1.9 0.0019 Adult retinal CTAAAACTGA 1.9 0.0019 Adult retinal TAAGTAGCTG 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL TTTTCTGCAT 7.7 0.0077 ONL GCAGGACATT (2) 5.7 0.0057 ONL TGGGTGTGAG 3.8 0.0038 ONL TTTTGTTTAT (5) 3.8 0.0038 ONL CTAAAAAAAA (20) 1.9 0.0019 ONL CTAAAACTGA 1.9 0.0019 ONL GCAGTACTGA (2) 1.9 0.0019 ONL TACATAATCT (5) 1.9 0.0019