Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.56337	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit	11	11 44.0 cM	18472
Gene Ontology	1-alkyl-2-acetylglycerophosphocholine esterase activity | acrosome formation | cell migration | centrosome | cytoplasm | cytoskeleton | hydrolase activity | microtubule associated complex | microtubule binding | microtubule cytoskeleton | mitosis | neuroblast proliferation | neurogenesis | neuronal migration | retrograde axon cargo transport
Human Homolog	PAFAH1B1[platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 225 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACTTTTGGAA (4) CTAAAAAAAA (2) GGCAAAATTG (2) GGTTTCCCCC (2) TAAAAAAAAA (3) TAAATTATTC TAAGTAGCTG TACATAATCT TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 177.7 0.1777 Cb medulloblastoma ACCCACAAGA ACTTTTGGAA (4) ATACAGTGAA CTAAAAAAAA (2) GCAGGACATT (2) GGCAAAATTG (2) GTGAATCCAA TAAAAAAAAA (3) TGGTGGAATG TGGTGTGACC (2) TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 362.9 0.3629 P8 GC+1d culture AATTGTTTAA ACCCACAAGA ATACAGTGAA CTAAAAAAAA (2) CTAAAACTGA GAGGTTATAT GCAGGACATT (2) GGCAAAATTG (2) GTGAATCCAA TAAAAAAAAA (3) TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 206.2 0.2062 P8 GC+SHH+1d culture ACCCACAAGA CTAAAAAAAA (2) GCAGGACATT (2) GCAGTACTGA GGTTTCCCCC (2) GTGAATCCAA TAAAAAAAAA (3) TAAATTAAAA TGGTGTGACC (2) TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 297.6 0.2976 3T3 fibroblasts GCAGGACATT (2) TAAAAAAAAA (3) TGGTGGAATG TGGTTGCTGG 241.8 0.2418 E15 cortex ACTTTTGGAA (4) CTAAAAAAAA (2) GCAGGACATT (2) GTGAATCCAA TAAAAAAAAA (3) TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 355.9 0.3559 P1 cortex CTAAAAAAAA (2) CTAAAACTGA GCAGGACATT (2) TAAAAAAAAA (3) TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 209 0.209 Hypothalamus ACCCACAAGA ACCCCTGATA (2) ACTTTTGGAA (4) ATACAGTGAA CTAAAAAAAA (2) GAGGTTATAT GATAAATTTT (2) GCAGGACATT (2) TAAAAAAAAA (3) TAAATTATTC TGGGTGTGAG TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 463.6 0.4636 E12.5 retina ACTTTTGGAA (4) CTAAAAAAAA (2) CTAAAACTGA GCAGTACTGA GGTTTCCCCC (2) GTGAATCCAA TAAAAAAAAA (3) TAAATTATTC TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 235 0.235 E14.5 retina ATACAGTGAA CTAAAAAAAA (2) TAAAAAAAAA (3) TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 1033.1 1.0331 E16.5 retina AATTGTTTAA ACCCCTGATA (2) ATACAGTGAA CTAAAAAAAA (2) GCAGGACATT (2) GCAGTACTGA TAAAAAAAAA (3) TACATAATCT TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 860.1 0.8601 E18.5 retina CTAAAAAAAA (2) TAAAAAAAAA (3) TAAATTAAAA TAAATTATTC TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT 456.4 0.4564 P0.5 retina ATACAGTGAA CTAAAAAAAA (2) TAAAAAAAAA (3) TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 272.9 0.2729 P2.5 retina ACCCACAAGA ACTTTTGGAA (4) CTAAAAAAAA (2) GCAGTACTGA GTGAATCCAA TAAAAAAAAA (3) TAAATTAAAA TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 315.3 0.3153 P4.5 retina ATACAGTGAA CTAAAAAAAA (2) GCAGTACTGA GTGAATCCAA TAAAAAAAAA (3) TAAATTAAAA TACATAATCT TGGTGGAATG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 374.6 0.3746 P6.5 retina ACCCACAAGA ATACAGTGAA CTAAAAAAAA (2) GAGGTTATAT GATAAATTTT (2) GCAGGACATT (2) GCAGTACTGA GTGAATCCAA TAAAAAAAAA (3) TAAATTATTC TGGGTGTGAG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 295.2 0.2952 P10.5 crx- retina ACCCACAAGA ACTTTTGGAA (4) CTAAAAAAAA (2) GATAAATTTT (2) GCAGGACATT (2) TAAAAAAAAA (3) TAAGTAGCTG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 368 0.368 P10.5 crx+ retina AATTGTTTAA ACCCACAAGA CTAAAAAAAA (2) CTAAAACTGA GCAGGACATT (2) GCAGTACTGA TAAAAAAAAA (3) TGGTGGAATG TGGTGTGACC (2) TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 178.7 0.1787 Adult retinal ACCCACAAGA CTAAAAAAAA (2) CTAAAACTGA GCAGGACATT (2) TAAAAAAAAA (3) TAAGTAGCTG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 266.8 0.2668 ONL CTAAAAAAAA (2) CTAAAACTGA GCAGGACATT (2) GCAGTACTGA TAAAAAAAAA (3) TACATAATCT TGGGTGTGAG TGGTTGCTGG TTAAAAAAAA (2) TTTTCTGCAT TTTTGTTTAT 463.4 0.4634