Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.56337	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit	11	11 44.0 cM	18472
Gene Ontology	1-alkyl-2-acetylglycerophosphocholine esterase activity | acrosome formation | cell migration | centrosome | cytoplasm | cytoskeleton | hydrolase activity | microtubule associated complex | microtubule binding | microtubule cytoskeleton | mitosis | neuroblast proliferation | neurogenesis | neuronal migration | retrograde axon cargo transport
Human Homolog	PAFAH1B1[platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 91 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTTCTGCAT 9.8 0.0098 P8 Cb GC ACTTTTGGAA (4) 4.9 0.0049 P8 Cb GC GGCAAAATTG (2) 1.6 0.0016 P8 Cb GC GGTTTCCCCC (2) 1.6 0.0016 P8 Cb GC TAAATTATTC 1.6 0.0016 P8 Cb GC TAAGTAGCTG 1.6 0.0016 Cb medulloblastoma TTTTCTGCAT 20.8 0.0208 Cb medulloblastoma GCAGGACATT (2) 9.2 0.0092 Cb medulloblastoma ACTTTTGGAA (4) 2.3 0.0023 Cb medulloblastoma ATACAGTGAA 2.3 0.0023 Cb medulloblastoma GGCAAAATTG (2) 2.3 0.0023 Cb medulloblastoma GTGAATCCAA 2.3 0.0023 Cb medulloblastoma TGGTGTGACC (2) 2.3 0.0023 P8 GC+1d culture TTTTCTGCAT 11.4 0.0114 P8 GC+1d culture GCAGGACATT (2) 8 0.008 P8 GC+1d culture AATTGTTTAA 1.1 0.0011 P8 GC+1d culture ATACAGTGAA 1.1 0.0011 P8 GC+1d culture CTAAAACTGA 1.1 0.0011 P8 GC+1d culture GGCAAAATTG (2) 1.1 0.0011 P8 GC+1d culture GTGAATCCAA 1.1 0.0011 P8 GC+SHH+1d culture TTTTCTGCAT 21.1 0.0211 P8 GC+SHH+1d culture GCAGGACATT (2) 3.5 0.0035 P8 GC+SHH+1d culture GGTTTCCCCC (2) 1.2 0.0012 P8 GC+SHH+1d culture GTGAATCCAA 1.2 0.0012 P8 GC+SHH+1d culture TAAATTAAAA 1.2 0.0012 P8 GC+SHH+1d culture TGGTGTGACC (2) 1.2 0.0012 3T3 fibroblasts GCAGGACATT (2) 3.5 0.0035 E15 cortex GCAGGACATT (2) 14.8 0.0148 E15 cortex ACTTTTGGAA (4) 4.9 0.0049 E15 cortex GTGAATCCAA 4.9 0.0049 E15 cortex TTTTCTGCAT 4.9 0.0049 P1 cortex GCAGGACATT (2) 9.1 0.0091 P1 cortex TTTTCTGCAT 9.1 0.0091 P1 cortex CTAAAACTGA 4.5 0.0045 Hypothalamus TTTTCTGCAT 10.9 0.0109 Hypothalamus GCAGGACATT (2) 9.1 0.0091 Hypothalamus TAAATTATTC 3.6 0.0036 Hypothalamus ACTTTTGGAA (4) 1.8 0.0018 Hypothalamus ATACAGTGAA 1.8 0.0018 Hypothalamus GATAAATTTT (2) 1.8 0.0018 Hypothalamus TGGGTGTGAG 1.8 0.0018 E12.5 retina ACTTTTGGAA (4) 3.8 0.0038 E12.5 retina TAAATTATTC 3.8 0.0038 E12.5 retina CTAAAACTGA 1.9 0.0019 E12.5 retina GGTTTCCCCC (2) 1.9 0.0019 E12.5 retina GTGAATCCAA 1.9 0.0019 E12.5 retina TTTTCTGCAT 1.9 0.0019 E14.5 retina TTTTCTGCAT 18.2 0.0182 E14.5 retina ATACAGTGAA 1.8 0.0018 E16.5 retina TTTTCTGCAT 14.5 0.0145 E16.5 retina GCAGGACATT (2) 7.2 0.0072 E16.5 retina ATACAGTGAA 3.6 0.0036 E16.5 retina AATTGTTTAA 1.8 0.0018 E18.5 retina TTTTCTGCAT 18.2 0.0182 E18.5 retina TAAATTAAAA 1.8 0.0018 E18.5 retina TAAATTATTC 1.8 0.0018 P0.5 retina TTTTCTGCAT 5.9 0.0059 P0.5 retina ATACAGTGAA 2 0.002 P2.5 retina TTTTCTGCAT 10.6 0.0106 P2.5 retina ACTTTTGGAA (4) 1.8 0.0018 P2.5 retina GTGAATCCAA 1.8 0.0018 P2.5 retina TAAATTAAAA 1.8 0.0018 P4.5 retina TTTTCTGCAT 4 0.004 P4.5 retina ATACAGTGAA 2 0.002 P4.5 retina GTGAATCCAA 2 0.002 P4.5 retina TAAATTAAAA 2 0.002 P6.5 retina TTTTCTGCAT 18.3 0.0183 P6.5 retina GCAGGACATT (2) 3.3 0.0033 P6.5 retina ATACAGTGAA 1.7 0.0017 P6.5 retina GATAAATTTT (2) 1.7 0.0017 P6.5 retina GTGAATCCAA 1.7 0.0017 P6.5 retina TAAATTATTC 1.7 0.0017 P6.5 retina TGGGTGTGAG 1.7 0.0017 P10.5 crx- retina TTTTCTGCAT 24.2 0.0242 P10.5 crx- retina GCAGGACATT (2) 16.7 0.0167 P10.5 crx- retina ACTTTTGGAA (4) 1.9 0.0019 P10.5 crx- retina GATAAATTTT (2) 1.9 0.0019 P10.5 crx- retina TAAGTAGCTG 1.9 0.0019 P10.5 crx+ retina TTTTCTGCAT 11.5 0.0115 P10.5 crx+ retina GCAGGACATT (2) 5.8 0.0058 P10.5 crx+ retina CTAAAACTGA 3.8 0.0038 P10.5 crx+ retina TGGTGTGACC (2) 3.8 0.0038 P10.5 crx+ retina AATTGTTTAA 1.9 0.0019 Adult retinal GCAGGACATT (2) 7.4 0.0074 Adult retinal TTTTCTGCAT 3.7 0.0037 Adult retinal CTAAAACTGA 1.9 0.0019 Adult retinal TAAGTAGCTG 1.9 0.0019 ONL TTTTCTGCAT 7.7 0.0077 ONL GCAGGACATT (2) 5.7 0.0057 ONL TGGGTGTGAG 3.8 0.0038 ONL CTAAAACTGA 1.9 0.0019