Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.57734	C430041B13Rik	RIKEN cDNA C430041B13 gene	10		320976
Mm.57734	A130099P19Rik	RIKEN cDNA A130099P19 gene	10		319978
Mm.57734	Lims1	LIM and senescent cell antigen-like domains 1	10	10 30.0 cM	110829
Gene Ontology	cell-matrix adhesion | focal adhesion | protein binding
Human Homolog	LIMS1[LIM and senescent cell antigen-like domains 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 142 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAATGCACTA (5) AACTTTTAAA AAGCCAGTCT (4) AGACAAAAAA (5) CCTTTAATCC (3) GGAGGGAAGG (4) TGCTATGAAA TGTGTGTGTG (2) TTCAAAGCCT (3) 105.9 0.1059 Cb medulloblastoma AACTTTTAAA AGACAAAAAA (5) CACACATTCA (5) CCTTTAATCC (3) TGTGTGTGTG (2) 113.3 0.1133 P8 GC+1d culture AACATAAAAT AACTTTTAAA AGACAAAAAA (5) CCTTTAATCC (3) TGCTATGAAA TGTGTGTGTG (2) TTCAAAGCCT (3) 87.9 0.0879 P8 GC+SHH+1d culture AAATGCACTA (5) AACATAAAAT AACTTTTAAA AATTTTGTGT AGACAAAAAA (5) CCTTTAATCC (3) TGTGTGTGTG (2) TTCAAAGCCT (3) 85.6 0.0856 3T3 fibroblasts AAGCCAGTCT (4) AATTTTGTGT CCTTTAATCC (3) TGTGTGTGTG (2) TTCAAAGCCT (3) 115.6 0.1156 E15 cortex AAATGCACTA (5) AACTTTTAAA AAGCCAGTCT (4) CCTTTAATCC (3) TGCTATGAAA 79 0.079 P1 cortex AACTTTTAAA AGACAAAAAA (5) CCTTTAATCC (3) TGTGTGTGTG (2) TTCAAAGCCT (3) 204.5 0.2045 Hypothalamus AACTTTTAAA AGACAAAAAA (5) CCTTTAATCC (3) TGCTATGAAA TGTGTGTGTG (2) TTAGCAGCAG (3) 77.9 0.0779 E12.5 retina AACTTTTAAA AAGCCAGTCT (4) AATTTTGTGT AGACAAAAAA (5) CCTTTAATCC (3) TGTGTGTGTG (2) TTAGCAGCAG (3) TTCAAAGCCT (3) 156 0.156 E14.5 retina AACTTTTAAA AGACAAAAAA (5) CCTTTAATCC (3) TGTGTGTGTG (2) TTCAAAGCCT (3) 209.6 0.2096 E16.5 retina AAATGCACTA (5) AACATAAAAT AACTTTTAAA AGACAAAAAA (5) CCTTTAATCC (3) TGTGTGTGTG (2) 128.5 0.1285 E18.5 retina AACATAAAAT AACTTTTAAA AGACAAAAAA (5) CCTTTAATCC (3) TGCTATGAAA TGTGTGTGTG (2) TTAGCAGCAG (3) TTCAAAGCCT (3) 125.5 0.1255 P0.5 retina AACTTTTAAA AGACAAAAAA (5) CCTTTAATCC (3) GGAGGGAAGG (4) TGTGTGTGTG (2) TTCAAAGCCT (3) 113.9 0.1139 P2.5 retina AAATGCACTA (5) AACTTTTAAA AGACAAAAAA (5) CACACATTCA (5) CCTTTAATCC (3) GGAGGGAAGG (4) TGCTATGAAA TGTGTGTGTG (2) TTCAAAGCCT (3) 148 0.148 P4.5 retina AACTTTTAAA AATTTTGTGT AGACAAAAAA (5) CACACATTCA (5) CCTTTAATCC (3) TGCTATGAAA TGTGTGTGTG (2) TTCAAAGCCT (3) 142.7 0.1427 P6.5 retina AACATAAAAT AACTTTTAAA AGACAAAAAA (5) ATTTGTGTTT (3) CCTTTAATCC (3) TGCTATGAAA TGTGTGTGTG (2) TTAGCAGCAG (3) 158.4 0.1584 P10.5 crx- retina AACTTTTAAA AGACAAAAAA (5) ATTTGTGTTT (3) CACACATTCA (5) CCTTTAATCC (3) TGTGTGTGTG (2) TTCAAAGCCT (3) 144.8 0.1448 P10.5 crx+ retina AACTTTTAAA AGACAAAAAA (5) ATTTGTGTTT (3) CCTTTAATCC (3) TGCTATGAAA TGTGTGTGTG (2) TTAGCAGCAG (3) TTCAAAGCCT (3) 117 0.117 Adult retinal AAATGCACTA (5) AACATAAAAT AACTTTTAAA AGACAAAAAA (5) ATTTGTGTTT (3) CCTTTAATCC (3) GGAGGGAAGG (4) TGCTATGAAA TGTGTGTGTG (2) TTAGCAGCAG (3) 239.1 0.2391 ONL AACATAAAAT AACTTTTAAA AAGCCAGTCT (4) AATTTTGTGT AGACAAAAAA (5) CCTTTAATCC (3) GGAGGGAAGG (4) TGTGTGTGTG (2) TTCAAAGCCT (3) 185.8 0.1858