Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.61526	Hmgcs1	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	13	13 66.0 cM	208715
Gene Ontology	acetyl-CoA metabolism | C21-steroid hormone biosynthesis | cholesterol biosynthesis | cytoplasm | DNA binding | hydroxymethylglutaryl-CoA synthase activity | lyase activity | nucleus | regulation of transcription, DNA-dependent | sex differentiation | transcription factor activity | transcription factor complex
Human Homolog	HMGCS1[3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 73 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGTTTAGTT TAATTTTTTT (2) TGAAATTTTC TTAGCAAGTT 19.6 0.0196 Cb medulloblastoma CAGTTTAGTT GGGGAAAAAA (4) TAATTTTTTT (2) TGAAATTTTC TTAGCAAGTT 16.1 0.0161 P8 GC+1d culture AGCCTCAGAC CACCATCTCC CAGTTTAGTT GGGGAAAAAA (4) TAATTTTTTT (2) TGAAATTTTC TTAGCAAGTT 45.6 0.0456 P8 GC+SHH+1d culture AGCCTCAGAC AGCTGAATAA CACCATCTCC CAGTTTAGTT GTCTGATTAG TAATTTTTTT (2) TGAAATTTTC TTAGCAAGTT 41 0.041 E15 cortex GGGGAAAAAA (4) 4.9 0.0049 P1 cortex GTCTGATTAG TAATTTTTTT (2) 31.8 0.0318 Hypothalamus AGCCTCAGAC CAGTTTAGTT TAATTTTTTT (2) TGAAATTTTC 19.9 0.0199 E12.5 retina CAGTTTAGTT GGGGAAAAAA (4) GTCTGATTAG TAATTTTTTT (2) TGAAATTTTC 32 0.032 E14.5 retina AGCCTCAGAC AGCTGAATAA CACCATCTCC CAGTTTAGTT TAATTTTTTT (2) TGAAATTTTC 25.4 0.0254 E16.5 retina AGCCTCAGAC CAGTTTAGTT GGGGAAAAAA (4) GTCTGATTAG TAATTTTTTT (2) TGAAATTTTC 25.3 0.0253 E18.5 retina AGCCTCAGAC CACCATCTCC CAGTTTAGTT GGGGAAAAAA (4) GTCTGATTAG TAATTTTTTT (2) TTAGCAAGTT 38 0.038 P0.5 retina TAATTTTTTT (2) 13.7 0.0137 P2.5 retina AGCTGAATAA CAGTTTAGTT TAATTTTTTT (2) TTAGCAAGTT 26.5 0.0265 P4.5 retina CAGTTTAGTT TAATTTTTTT (2) 15.9 0.0159 P6.5 retina GGGGAAAAAA (4) TAATTTTTTT (2) TTAGCAAGTT 8.4 0.0084 P10.5 crx- retina TAATTTTTTT (2) 9.3 0.0093 P10.5 crx+ retina GTCTGATTAG TAATTTTTTT (2) TGAAATTTTC 11.5 0.0115 Adult retinal TAATTTTTTT (2) TGAAATTTTC TTAGCAAGTT 5.7 0.0057 ONL TAATTTTTTT (2) 3.8 0.0038